BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,569,452	A→G	pseudogene (455/921 nt)	rpnD →	truncated recombination‑promoting nuclease‑like protein RpnD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,569,452	0	A	G	100.0%	412.6 / NA	117	pseudogene (455/921 nt)	rpnD	truncated recombination‑promoting nuclease‑like protein RpnD
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (62/55); total (62/55)

Only 100 of 119 total aligned reads displayed.

ATAGAGCATGATAAACGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAACGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATCAACTGGTAG  >  NC_000913/4569316‑4569589

ataGAGCATGATAAACGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAgcgc                                                                                                                                        <  1:1122481/140‑1 (MQ=255)

         gATAAACGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTccc                                                                                                                               >  1:998139/1‑140 (MQ=255)

         gATAAACGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTccc                                                                                                                               >  2:224764/1‑140 (MQ=255)

         gATAAACGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTccc                                                                                                                               >  1:272644/1‑140 (MQ=255)

           tAAACGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGc                                                                                                                             <  2:306457/140‑1 (MQ=255)

              aCGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCtg                                                                                                                           >  2:57315/1‑139 (MQ=255)

               cGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCtggt                                                                                                                         <  2:1039774/140‑1 (MQ=255)

                 ccAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCtggtgg                                                                                                                       >  1:786487/1‑140 (MQ=255)

                  cAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGa                                                                                                                      <  1:224764/140‑1 (MQ=255)

                   aGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCtg                                                                                                                           <  1:574499/134‑1 (MQ=255)

                   aGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCtg                                                                                                                           >  2:574499/1‑134 (MQ=255)

                   aGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGAt                                                                                                                     >  1:442955/1‑140 (MQ=255)

                    gCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATg                                                                                                                    >  1:152460/1‑140 (MQ=255)

                     ccGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGt                                                                                                                   >  2:273781/1‑140 (MQ=255)

                              ttGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCtggt                                                                                                                         >  2:582221/1‑125 (MQ=255)

                              ttGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCtggt                                                                                                                         <  1:582221/125‑1 (MQ=255)

                              ttGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCATTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTg                                                                                                              <  2:124474/136‑1 (MQ=255)

                               tGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTg                                                                                                         >  2:460854/1‑140 (MQ=255)

                                  tCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCa                                                                                                      <  1:1058225/140‑1 (MQ=255)

                                     tCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCa                                                                                                      <  2:967763/137‑1 (MQ=255)

                                     tCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCa                                                                                                      >  1:967763/1‑137 (MQ=255)

                                     tCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAgac                                                                                                   >  1:49292/1‑140 (MQ=255)

                                         gATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGacgacg                                                                                               <  2:49292/140‑1 (MQ=255)

                                               aTTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGATACTGTCGTGCCAGACGACGAGATtg                                                                                         >  2:1002059/1‑140 (MQ=255)

                                                ttttATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATtgt                                                                                        >  1:548763/1‑140 (MQ=255)

                                                  ttATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTgc                                                                                      >  2:550673/1‑140 (MQ=255)

                                                   tATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGTAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTgca                                                                                     <  2:786487/140‑1 (MQ=255)

                                                     tCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTgcagc                                                                                   >  2:114300/1‑140 (MQ=255)

                                                          gTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCg                                                                               >  1:612986/1‑139 (MQ=255)

                                                          gTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCg                                                                               <  2:612986/139‑1 (MQ=255)

                                                          gTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGc                                                                              >  2:298502/1‑140 (MQ=255)

                                                          gTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGc                                                                              >  1:585991/1‑140 (MQ=255)

                                                          gTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGc                                                                              >  1:612299/1‑140 (MQ=255)

                                                          gTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGc                                                                              >  1:176604/1‑140 (MQ=255)

                                                          gTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTT‑CCGCTGGGGGCATTTTCTTGCGTGCCAGGACACCGGATTGTTCAGCATCGcc                                                                             >  1:645473/1‑139 (MQ=255)

                                                             gCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCaga                                                                           >  2:78107/1‑140 (MQ=255)

                                                              ccGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCa                                                                             >  2:844644/1‑137 (MQ=255)

                                                              ccGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCa                                                                             <  1:844644/137‑1 (MQ=255)

                                                               cGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGt                                                                         >  1:569357/1‑140 (MQ=255)

                                                                 tAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCg                                                                       <  2:436945/140‑1 (MQ=255)

                                                                 tAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCg                                                                       >  1:287574/1‑140 (MQ=255)

                                                                  aGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGc                                                                      <  2:998139/140‑1 (MQ=255)

                                                                  aGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGc                                                                      <  1:273781/140‑1 (MQ=255)

                                                                   gTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCTACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGcc                                                                     <  2:1147180/140‑1 (MQ=255)

                                                                   gTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCag                                                                            <  2:698063/133‑1 (MQ=255)

                                                                   gTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCag                                                                            >  1:698063/1‑133 (MQ=255)

                                                                        tACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGtt                                                                >  2:765739/1‑140 (MQ=255)

                                                                         aCCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTg                                                               >  1:648539/1‑140 (MQ=255)

                                                                         aCCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTg                                                               >  1:339795/1‑140 (MQ=255)

                                                                              tGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGtt                                                          >  1:444369/1‑140 (MQ=255)

                                                                              tGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGtt                                                          >  2:875986/1‑140 (MQ=255)

                                                                                   ccTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATcc                                                     >  1:754035/1‑140 (MQ=255)

                                                                                    cTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCa                                                    <  1:114300/140‑1 (MQ=255)

                                                                                     tgtgCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGTAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCaa                                                   >  2:931883/1‑140 (MQ=255)

                                                                                     tgtgCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCaa                                                   >  1:999807/1‑140 (MQ=255)

                                                                                     tgtgCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCaa                                                   >  1:304592/1‑140 (MQ=255)

                                                                                       tgCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCaaaa                                                 <  2:612299/140‑1 (MQ=255)

                                                                                           ggctggACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCat                                             >  1:542540/1‑140 (MQ=255)

                                                                                            gctggACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCata                                            <  2:754035/140‑1 (MQ=255)

                                                                                              tggACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATAtt                                          <  1:1002059/140‑1 (MQ=255)

                                                                                                gACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCg                                        <  2:585991/140‑1 (MQ=255)

                                                                                                gACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCg                                        <  2:648539/140‑1 (MQ=255)

                                                                                                 aCGAATTTGCCGACCCGACTACCGCACGGAAGCTTTTTAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGAt                                                       <  2:14265/124‑1 (MQ=255)

                                                                                                 aCGAATTTGCCGACCCGACTACCGCACGGAAGCTTTTTAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGAt                                                       >  1:14265/1‑124 (MQ=255)

                                                                                                 aCGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGc                                               >  2:801818/1‑132 (MQ=255)

                                                                                                 aCGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGc                                               <  1:801818/132‑1 (MQ=255)

                                                                                                 aCGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGc                                       >  1:134915/1‑140 (MQ=255)

                                                                                                 aCGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGc                                       >  1:307052/1‑140 (MQ=255)

                                                                                                 aCGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGc                                       >  2:458930/1‑140 (MQ=255)

                                                                                                    aaTTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAg                                    <  2:304592/140‑1 (MQ=255)

                                                                                                    aaTTTGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAg                                    <  1:931883/140‑1 (MQ=255)

                                                                                                      tttGCCGACCCGACTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAgcg                                  <  2:444369/140‑1 (MQ=255)

                                                                                                       ttGCCAACCCGACTACCGCACGGAAGCTTTTAAGCGCGGCGTT‑CCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGcgcg                                <  2:645473/140‑1 (MQ=255)

                                                                                                          ccgacccgacTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGAt                              <  1:334492/140‑1 (MQ=255)

                                                                                                          ccgacccgacTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGAt                              <  2:324139/140‑1 (MQ=255)

                                                                                                              cccgacTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTG‑TGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGAt                         <  1:1077194/140‑1 (MQ=255)

                                                                                                               ccgacTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGAt                         <  2:176604/140‑1 (MQ=255)

                                                                                                                 gacTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATgg                       <  2:442955/140‑1 (MQ=255)

                                                                                                                  acTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATggg                      >  1:951127/1‑140 (MQ=255)

                                                                                                                   cTACCGCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATgggg                     >  2:683943/1‑140 (MQ=255)

                                                                                                                        gCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTAt                <  1:78107/140‑1 (MQ=255)

                                                                                                                        gCACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTAt                <  1:28895/140‑1 (MQ=255)

                                                                                                                         cACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATc               >  2:306096/1‑140 (MQ=255)

                                                                                                                         cACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATc               <  2:272644/140‑1 (MQ=255)

                                                                                                                         cACGGAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATc               >  2:1064565/1‑140 (MQ=255)

                                                                                                                            ggAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATc               >  1:704773/1‑137 (MQ=255)

                                                                                                                            ggAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATc               <  2:704773/137‑1 (MQ=255)

                                                                                                                            ggAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGAt            >  1:820055/1‑140 (MQ=255)

                                                                                                                             gAAGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATc           <  1:875986/140‑1 (MQ=255)

                                                                                                                              aaGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATggg                      <  2:280135/128‑1 (MQ=255)

                                                                                                                              aaGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATggg                      >  1:280135/1‑128 (MQ=255)

                                                                                                                               aGCTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATCaa         <  1:683943/140‑1 (MQ=255)

                                                                                                                                 cTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATCAACt       <  1:1113710/140‑1 (MQ=255)

                                                                                                                                 cTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATCAACt       <  2:548763/140‑1 (MQ=255)

                                                                                                                                 cTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATCAACt       >  2:411445/1‑140 (MQ=255)

                                                                                                                                 cTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATCAACt       <  2:244924/140‑1 (MQ=255)

                                                                                                                                 cTTTATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATCAACt       <  2:1092852/140‑1 (MQ=255)

                                                                                                                                   ttATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATCAACTgg     <  2:339795/140‑1 (MQ=255)

                                                                                                                                   ttATAGCGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATCAACTgg     <  1:765739/140‑1 (MQ=255)

                                                                                                                                     ataGCGCCGCGTTCCCGCTGGTGGATG‑AACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATCAACTGgtag  <  1:544937/140‑1 (MQ=255)

ATAGAGCATGATAAACGCCAGCCGCTACCGTTGGTCATCCCGATGCTATTTTATCACGGTAGCCGTAGTCCTTACCCCTGGTCCCTGTGCTGGCTGGACGAATTTGCCGACCCGACTACCGCACGGAAGCTTTATAACGCCGCGTTCCCGCTGGTGGATGTTACTGTCGTGCCAGACGACGAGATTGTGCAGCATCGCAGAGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATCAACTGGTAG  >  NC_000913/4569316‑4569589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`