| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,018,976 | (A)8→9 | intergenic (+39/+37) | matP → / ← ompA | macrodomain Ter protein/outer membrane porin A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,018,968 | 1 | . | A | 92.9% | 135.3 / 2.7 | 42 | intergenic (+31/+45) | matP/ompA | macrodomain Ter protein/outer membrane porin A |
| Reads supporting (aligned to +/- strand): ref base . (2/1); new base A (18/21); total (20/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.98e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.91e-01 | |||||||||||
GTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAGTCGAT > NC_000913/1018842‑1019093 | gTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAA‑acccc > 1:1008437/1‑139 (MQ=255) tCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCgc < 2:1008437/140‑1 (MQ=255) cTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCgcagca > 2:1062323/1‑140 (MQ=255) tGATTAAAGATGCGAAAAAAAAAGAAAAATACGCAAAAAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCGGGGAAAGAAAAAACTGAAGAAAGTCAGTTAATTTTACAAAAGGA‑AAAAAAAACCCCCGcagcag < 2:971377/140‑1 (MQ=255) gATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCagcagc > 1:539784/1‑140 (MQ=255) gAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTAc < 2:539784/140‑1 (MQ=255) gAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCACTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTAc < 2:269816/140‑1 (MQ=255) aaaCAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCa < 1:7478/140‑1 (MQ=255) aaCAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTAccgg > 1:694501/1‑138 (MQ=255) aaGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACga < 1:852160/140‑1 (MQ=255) agagAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑ACCCGCAGCAGCGGGGTTTTTCTACCAGACga < 1:117903/139‑1 (MQ=255) agagAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑ACCCGCAGCAGCGGGGTTTTTCTACCAGACga > 2:117903/1‑139 (MQ=255) gAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACtt > 1:406589/1‑133 (MQ=255) gAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACtt < 2:406589/133‑1 (MQ=255) gAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTg > 2:7452/1‑140 (MQ=255) tAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCgg < 2:971676/140‑1 (MQ=255) tctcTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCGGACGAGAACTTAAGCCTGCGGCTGAGTTACa < 2:694501/140‑1 (MQ=255) tctcTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACa < 1:7452/140‑1 (MQ=255) tctcTGAAGCAGGATCCGCAGGCATTGCTGGGTAAGGAAAAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCCGGCTTCTTCTACCAGACGAGAACTTAAGCCTTCGGCTGAGTTACa < 2:1142295/140‑1 (MQ=255) ctctGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACaa > 2:955531/1‑140 (MQ=255) tGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGt > 1:347333/1‑140 (MQ=255) aGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCtt > 2:1070278/1‑140 (MQ=255) cAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTg < 2:473538/140‑1 (MQ=255) ggATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGAt < 1:1070278/140‑1 (MQ=255) ggATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAAc > 1:147957/1‑130 (MQ=255) ggATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAAc < 2:147957/130‑1 (MQ=255) aTTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACtt > 2:871184/1‑139 (MQ=255) aTTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACtt > 2:387834/1‑139 (MQ=255) aTTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACtt < 1:871184/139‑1 (MQ=255) aTTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACtt < 1:387834/139‑1 (MQ=255) aTTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTc > 1:781055/1‑140 (MQ=255) tGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGGCGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGa > 1:538713/1‑140 (MQ=255) gTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTa > 1:207801/1‑140 (MQ=255) tAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTAc > 1:659446/1‑140 (MQ=255) gAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGcga < 2:659446/140‑1 (MQ=255) aCTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGGCGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATc < 2:538713/140‑1 (MQ=255) aCTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGAt < 2:121704/125‑1 (MQ=255) aCTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGAt > 1:121704/1‑125 (MQ=255) cTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGcga < 1:329412/134‑1 (MQ=255) cTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGcga > 2:329412/1‑134 (MQ=255) gTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCa > 2:805469/1‑134 (MQ=255) gTTCAATTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCa < 1:805469/134‑1 (MQ=255) aaTTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAGTCGAt < 2:599136/140‑1 (MQ=255) aaTTTACTAAAGGCAAAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAGTCGAt < 2:207801/140‑1 (MQ=255) | GTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGC‑AAAAAAAA‑CCCCGCAGCAGCGGGGTTTTTCTACCAGACGAGAACTTAAGCCTGCGGCTGAGTTACAACGTCTTTGATACCTTTAACTTCGATCTCTACGCGACGATCCGGAGCCAGGCAGTCGAT > NC_000913/1018842‑1019093 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |