| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,135,776 | T→C | D108G (GAT→GGT) | wzb ← | protein‑tyrosine phosphatase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,135,776 | 0 | T | C | 98.1% | 171.9 / ‑3.3 | 52 | coding (323/444 nt) | wzb | protein‑tyrosine phosphatase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (25/26); minor base . (1/0); total (26/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.64e-01 | |||||||||||
TCATTCTTATACCTGCTCTGCGTTCAATGCCTGCGCCCACTGGCGGGCAGACCGTTCAAGTAATGTGTACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTAGTTGCGACACAGACGGCGGCTGATTTGACGGGCACAGTG > NC_000913/2135649‑2135912 | tCATTCTTATACCTGCTCTGCGTTCAATGCCTGCGCCCACTGGCGGGCAGACCGTTCAAGTAATGTGTACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTAcccc < 1:726301/131‑1 (MQ=255)tCATTCTTATACCTGCTCTGCGTTCAATGCCTGCGCCCACTGGCGGGCAGACCGTTCAAGTAATGTGTACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTAcccc > 2:726301/1‑131 (MQ=255) ttATACCTGCTCTGCGTTCAATGCCTGCGCCCACTGGCGGGCAGACCGTTCAAGTAATGTGTACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCa < 2:59420/140‑1 (MQ=255) taCCTGCTCTGCGTTCAATGCCTGCGCCCACTGGCGGGCAGACCGTTCAAGTAATGTGTACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCa < 2:254053/140‑1 (MQ=255) tGCTCTGCGTTCAATGCCTGCGCCCACTGGCGGGCAGACCGTTCAAGTAATGTGTACACCGCTGCAAACGTTTCCCGGCTTATGCGATACGGATCGGGGGTTTCACATTCGTTACCCCAGTGACCAAACAGCATCACttt > 2:1007036/1‑140 (MQ=255) gCTCTGCGTTCAATGCCTGCGCCCACTGGCGGGCAGACCGTTCAAGTAATGTGTACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTg > 1:608837/1‑140 (MQ=255) gCTCTGCGTTCAATGCCTGCGCCCACTGGCGGGCAGACCGTTCAAGTAATGTGTACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTg > 2:648264/1‑140 (MQ=255) gCTCTGCGTTCAATGCCTGCGCCCACTGGCGGGCAGACCGTTCAAGTAATGTGTACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTg > 1:537445/1‑140 (MQ=255) ctctGCGTTCAATGCCTGCGCCCACTGGCGGGCAGACCGTTCAAGTAATGTGTACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACt > 1:79706/1‑136 (MQ=255) ctctGCGTTCAATGCCTGCGCCCACTGGCGGGCAGACCGTTCAAGTAATGTGTACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACt < 2:79706/136‑1 (MQ=255) ctctGCGTTCAATGCCTGCGCCCACTGGCGGGCAGACCGTTCAAGTAATGTGTACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGc < 1:630743/140‑1 (MQ=255) tctGCGTTCAATGCCTGCGCCCACTGGCGGGCAGACCGTTCAAGTAATGTGTACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGcc > 2:767097/1‑140 (MQ=255) cGTTCAATGCCTGCGCCCACTGGCGGGCAGACCGTTCAAGTAATGTGTACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCgcgc < 1:647417/140‑1 (MQ=255) ttCAATGCCTGCGCCCACTGGCGGGCAAACCGTTCAAATAATGTGTACACCGCTTCAAACGGTTCCCCGCTTTTTTGATACGGGTTGGGGGTTTTAACTTTCTTACCCCACAGACCCAAAAACCTCACCTTGGCGCGCAt > 2:427818/1‑140 (MQ=255) aaTGCCTGCGCCCACTGGCGGGCAGACCGTTCAAGTAATGTGTACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCcgcg > 1:328695/1‑134 (MQ=255) aaTGCCTGCGCCCACTGGCGGGCAGACCGTTCAAGTAATGTGTACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCcgcg < 2:328695/134‑1 (MQ=255) aaTGCCTGCGCCCACTGGCGGGCAGACCGTTCAAGTAATGTGTACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCAtctc < 2:537445/140‑1 (MQ=255) gCCTGCGCCCACTGGCGGGCAGACCGTTCAAGTAATGTGTACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCgg < 2:1098825/140‑1 (MQ=255) gcgcCCACTGGCGGGCAGACCGTTCAAGTAATGTGTACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGcc > 2:1042403/1‑140 (MQ=255) cgcCCACTGGCGGGCAGACCGTTCAAGTAATGTGTACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGt < 2:878419/136‑1 (MQ=255) cgcCCACTGGCGGGCAGACCGTTCAAGTAATGTGTACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGt > 1:878419/1‑136 (MQ=255) cccACTGGCGGGCAGACCGTTCAAGTAATGTGTACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCAtc < 1:648264/140‑1 (MQ=255) aGTAATGTGTACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGgcg < 1:20518/140‑1 (MQ=255) aTGTGTACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCttt > 2:919742/1‑140 (MQ=255) tgtgTACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCtttt < 1:1007036/140‑1 (MQ=255) gtgtACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGCGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTc < 2:1138423/140‑1 (MQ=255) gtACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAGACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCa < 2:965874/140‑1 (MQ=255) gtACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCa < 1:1042403/140‑1 (MQ=255) gtACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCa < 1:919742/140‑1 (MQ=255) tACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATg > 2:821560/1‑128 (MQ=255) tACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATg < 1:821560/128‑1 (MQ=255) tACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCAt > 1:875878/1‑140 (MQ=255) acacCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATg > 1:362031/1‑140 (MQ=255) cacCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATgg > 1:530677/1‑140 (MQ=255) cacCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATgg > 2:452487/1‑140 (MQ=255) cGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCa > 2:996217/1‑140 (MQ=255) gCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGTTTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCaa > 1:626826/1‑140 (MQ=255) gCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCaa > 2:498001/1‑140 (MQ=255) tGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCaaaa > 2:972473/1‑140 (MQ=255) tGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCaaaa > 2:935532/1‑140 (MQ=255) aaaCGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCa < 1:935532/140‑1 (MQ=255) aCGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAgg < 2:362031/140‑1 (MQ=255) tCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGt > 2:513051/1‑125 (MQ=255) tCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGt < 1:513051/125‑1 (MQ=255) ccGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTAGt < 1:996217/140‑1 (MQ=255) gCTTTTGCGATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTAGTTGc < 1:498001/140‑1 (MQ=255) gATACGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTAGTTGCGACACAGa < 1:972473/140‑1 (MQ=255) aCGGATCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTAGTTGCGACACAGAcgg > 1:371353/1‑140 (MQ=255) aTCGGGGATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTAGTTGCGACACAGACggcggc > 2:940863/1‑140 (MQ=255) gggATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTAGTTGCGACACAGACGGCGGCTGAt < 1:54277/140‑1 (MQ=255) ggATTTCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTAGTTGCGACACAGACGGCGGCTGAtt > 1:775205/1‑140 (MQ=255) tCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTAGTTGCGACACAGACGGCGGCTGATTTGACg > 2:302783/1‑140 (MQ=255) tCACATTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTAGTAGCGACACAGACGGCGGCTGATTTGACg < 2:626826/140‑1 (MQ=255) tCACATTCGTTA‑CCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTAGTTGCGACACAGACGGCGGCTGATTTGACgg > 2:977785/1‑140 (MQ=255) caTTCGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTAGTTGCGACACAGACGGCGGCTGATTTGACGGGc < 1:940863/140‑1 (MQ=255) cGTTACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTAGTTGCGACACAGACGGCGGCTGATTTGACGGGCACAg > 2:351345/1‑140 (MQ=255) ttACCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTAGTTGCGACACAGACGGCGGCTGATTTGACGGGCACAGTg < 1:302783/140‑1 (MQ=255) | TCATTCTTATACCTGCTCTGCGTTCAATGCCTGCGCCCACTGGCGGGCAGACCGTTCAAGTAATGTGTACACCGCTGCAAACGTTTCCCGGCTTTTGCGATACGGATCGGGGATTTCACATTCGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTAGTTGCGACACAGACGGCGGCTGATTTGACGGGCACAGTG > NC_000913/2135649‑2135912 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |