mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 31,923 | T→C | G369G (GGT→GGC) | carB → | carbamoyl phosphate synthetase subunit beta |
| RA | 89,416 | A→G | intergenic (+384/‑218) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 114,650 | C→T | A359T (GCG→ACG) | hofC ← | inner membrane protein HofC |
| RA | 124,133 | G→A | A373T (GCA→ACA) | aceE → | pyruvate dehydrogenase E1 component |
| RA | 160,636 | C→T | intergenic (‑32/+146) | dksA ← / ← sfsA | RNA polymerase‑binding transcription factor DksA/putative DNA‑binding transcriptional regulator of maltose metabolism |
| RA | 178,882 | A→G | V91A (GTC→GCC) | mtn ← | 5'‑methylthioadenosine/S‑adenosylhomocysteine nucleosidase |
| RA | 184,069 | A→G | G9G (GGT→GGC) | yaeH ← | DUF3461 domain‑containing protein YaeH |
| RA | 213,556 | T→C | V409A (GTA→GCA) | tilS → | tRNA(Ile)‑lysidine synthetase |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 268,692 | T→A | D90V (GAT→GTT) | ykfA ← | CP4‑6 prophage; putative GTP‑binding protein YkfA |
| RA | 293,744 | T→C | S59G (AGC→GGC) | yagL ← | CP4‑6 prophage; resolvase‑like catalytic domain‑containing protein YagL |
| RA | 333,891 | C→T | P181P (CCG→CCA) | yahB ← | putative LysR‑type DNA‑binding transcriptional regulator YahB |
| RA | 342,291 | T→C | R389R (CGT→CGC) | yahJ → | putative deaminase with metallo‑dependent hydrolase domain |
| RA | 392,964 | T→A | intergenic (‑63/‑6) | insE‑2 ← / → yaiT | IS3 element protein InsE/putative autotransporter YaiT |
| RA | 418,653 | A→G | G255G (GGA→GGG) | phoR → | sensory histidine kinase PhoR |
| RA | 493,290 | C→T | A400V (GCA→GTA) A400V (GCA→GTA) |
dnaX → dnaX → |
DNA polymerase III subunit tau DNA polymerase III subunit tau |
| RA | 494,207 | G→A | V44V (GTG→GTA) | ybaB → | putative nucleoid‑associated protein YbaB |
| RA | 527,577 | T→C | intergenic (+36/‑4) | rhsD → / → ybbC | protein RhsD/PF15631 family protein YbbC |
| RA | 527,915 | (A)5→4 | coding (335/369 nt) | ybbC → | PF15631 family protein YbbC |
| RA | 589,810 | A→G | L382P (CTG→CCG) | nfrA ← | bacteriophage N4 receptor, outer membrane protein |
| RA | 596,062 | G→A | E155K (GAG→AAG) | cusC → | copper/silver export system outer membrane channel |
| RA | 626,292 | A→G | T75A (ACC→GCC) | entE → | 2,3‑dihydroxybenzoate‑AMP ligase |
| RA | 684,378 | C→T | G12D (GGT→GAT) | rihA ← | pyrimidine‑specific ribonucleoside hydrolase RihA |
| RA | 735,136 | (G)6→7 | pseudogene (917/1434 nt) | ybfO → | conserved protein, rhs‑like YbfO |
| RA | 742,127 | A→G | Y144H (TAT→CAT) | dtpD ← | dipeptide:H(+) symporter DtpD |
| RA | 746,576 | (G)5→6 | coding (642/792 nt) | nei → | endonuclease VIII |
| RA | 810,745 | A→G | K122R (AAA→AGA) | bioF → | 8‑amino‑7‑oxononanoate synthase |
| RA | 868,422 | (C)8→7 | coding (903/1872 nt) | gsiA → | glutathione ABC transporter ATP binding subunit GsiA |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 892,129 | T→C | L55L (TTA→CTA) | rimK → | ribosomal protein S6 modification protein |
| RA | 911,763 | G→A | R130C (CGT→TGT) | hcr ← | NADH oxidoreductase |
| RA | 916,431 | A→G | intergenic (‑384/‑42) | aqpZ ← / → ybjD | water channel AqpZ/DUF2813 domain‑containing protein YbjD |
| RA | 932,340 | (A)8→7 | intergenic (‑290/‑255) | trxB ← / → lrp | thioredoxin reductase/DNA‑binding transcriptional dual regulator Lrp |
| RA | 947,956 | C→T | A243V (GCG→GTG) | ycaM → | putative transporter YcaM |
| RA | 960,601 | T→C | V113A (GTT→GCT) | ycaL → | periplasmic protease YcaL |
| RA | 989,500 | T→C | D286G (GAC→GGC) | pncB ← | nicotinate phosphoribosyltransferase |
| RA | 994,316 | T→A | I173F (ATC→TTC) | ssuC ← | aliphatic sulfonate ABC transporter membrane subunit |
| RA | 1,010,898 | C→T | A312V (GCC→GTC) | uup → | ATP‑binding protein with possible role in replication |
| RA | 1,033,499 | A→G | V82V (GTA→GTG) | hyaB → | hydrogenase 1 large subunit |
| RA | 1,048,196 | C→T | A166T (GCA→ACA) | gfcC ← | capsule biosynthesis GfcC family protein |
| RA | 1,051,785 | T→C | C34C (TGT→TGC) | ymcF → | protein YmcF |
| RA | 1,143,140 | T→C | T410A (ACT→GCT) | rne ← | ribonuclease E |
| RA | 1,157,016 | A→G | L80L (TTA→TTG) | ycfH → | putative metal‑dependent hydrolase YcfH |
| RA | 1,162,230 | C→T | H116Y (CAT→TAT) | hinT → | purine nucleoside phosphoramidase |
| RA | 1,167,058 | G→A | G325D (GGC→GAC) | ndh → | NADH:quinone oxidoreductase II |
| RA | 1,200,928 | A→G | C35C (TGT→TGC) | xisE ← | e14 prophage; putative excisionase |
| RA | 1,220,971 | G→A | pseudogene (1371/2648 nt) | ycgH → | putative transporter component, N‑terminal fragment |
| RA | 1,245,222 | T→C | S21S (AGT→AGC) | ycgY → | uncharacterized protein YcgY |
| RA | 1,260,031 | A→G | V258A (GTG→GCG) | dauA ← | aerobic C4‑dicarboxylate transporter DauA |
| RA | 1,289,178 | A→G | intergenic (‑46/‑67) | ychJ ← / → rssA | NTF2‑like domain‑containing protein YchJ/putative patatin‑like phospholipase RssA |
| RA | 1,318,571 | (C)6→7 | coding (1218/1362 nt) | trpC ← | fused indole‑3‑glycerol phosphate synthase/phosphoribosylanthranilate isomerase |
| RA | 1,330,165 | A→G | E278E (GAA→GAG) | sohB → | S49 peptidase family protein |
| RA | 1,351,196 | (G)7→6 | intergenic (‑157/+211) | fabI ← / ← ycjD | enoyl‑[acyl‑carrier‑protein] reductase/DUF559 domain‑containing protein YcjD |
| RA | 1,375,151 | C→T | F63F (TTC→TTT) | ycjQ → | putative zinc‑binding dehydrogenase YcjQ |
| RA | 1,428,424 | A→G | D101D (GAT→GAC) | insH‑5 ← | Rac prophage; IS5 transposase and trans‑activator |
| RA | 1,428,432 | G→A | L99L (CTG→TTG) | insH‑5 ← | Rac prophage; IS5 transposase and trans‑activator |
| RA | 1,428,451 | T→C | R92R (CGA→CGG) | insH‑5 ← | Rac prophage; IS5 transposase and trans‑activator |
| RA | 1,428,463 | G→A | R88R (CGC→CGT) | insH‑5 ← | Rac prophage; IS5 transposase and trans‑activator |
| RA | 1,428,652 | G→C | L25M (CTC→TTG) | insH‑5 ← | Rac prophage; IS5 transposase and trans‑activator |
| RA | 1,428,654 | G→A | L25M (CTC→TTG) | insH‑5 ← | Rac prophage; IS5 transposase and trans‑activator |
| RA | 1,428,669 | G→T | R20R (CGA→AGA) | insH‑5 ← | Rac prophage; IS5 transposase and trans‑activator |
| RA | 1,428,686 | G→C | T14S (ACT→AGT) | insH‑5 ← | Rac prophage; IS5 transposase and trans‑activator |
| RA | 1,453,034 | A→G | V203V (GTT→GTC) | paaZ ← | oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase |
| RA | 1,475,119 | (T)7→6 | intergenic (+38/‑25) | pdxI → / → ydbD | pyridoxine 4‑dehydrogenase/DUF2773 domain‑containing protein YdbD |
| RA | 1,517,056 | A→G | intergenic (+54/+43) | patD → / ← yncL | gamma‑aminobutyraldehyde dehydrogenase/uncharacterized protein YncL |
| RA | 1,541,351 | C→T | E414K (GAA→AAA) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,594,132 | (C)8→7 | pseudogene (3955/5422 nt) | yneO ← | AIDA‑I family autotransporter YneO |
| RA | 1,597,640 | C→T | pseudogene (447/5422 nt) | yneO ← | AIDA‑I family autotransporter YneO |
| RA | 1,604,757 | T→C | R237R (CGT→CGC) | lsrD → | Autoinducer‑2 ABC transporter membrane subunit LsrD |
| RA | 1,634,642 | C→T | G82S (GGC→AGC) | tfaQ ← | Qin prophage; putative tail fiber assembly protein TfaQ |
| RA | 1,656,072 | G→A | A89T (GCC→ACC) | ynfB → | DUF1283 domain‑containing protein YnfB |
| RA | 1,663,395 | G→A | G136R (GGG→AGG) | ynfG → | putative oxidoreductase YnfG |
| RA | 1,673,673 | T→C | intergenic (‑172/‑240) | mdtJ ← / → tqsA | multidrug/spermidine efflux pump membrane subunit MdtJ/autoinducer 2 exporter |
| RA | 1,685,542 | (C)6→5 | coding (1047/1404 nt) | fumC ← | fumarase C |
| RA | 1,688,868 | T→C | V98A (GTT→GCT) | manA → | mannose‑6‑phosphate isomerase |
| RA | 1,695,427 | T→C | E215E (GAA→GAG) | uidA ← | beta‑glucuronidase |
| RA | 1,710,630 | A→G | T143A (ACC→GCC) | rsxG → | SoxR [2Fe‑2S] reducing system protein RsxG |
| RA | 1,715,617 | T→C | E91E (GAA→GAG) | pdxY ← | pyridoxal kinase 2 |
| RA | 1,728,437 | G→A | A31T (GCC→ACC) | rnt → | RNase T |
| RA | 1,749,625 | T→C | T242A (ACC→GCC) | ydhU ← | putative cytochrome YdhU |
| RA | 1,781,438 | T→C | V15A (GTT→GCT) | ydiS → | putative oxidoreductase with FAD/NAD(P)‑binding domain |
| RA | 1,794,760 | T→C | I131M (ATA→ATG) | btuC ← | vitamin B12 ABC transporter membrane subunit |
| RA | 1,843,273 | T→C | G301G (GGT→GGC) | gdhA → | glutamate dehydrogenase |
| RA | 1,844,210 | T→C | D221G (GAC→GGC) | ynjI ← | DUF1266 domain‑containing protein YnjI |
| RA | 1,873,384 | A→G | K448K (AAA→AAG) | dgcJ → | putative diguanylate cyclase DgcJ |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,881,626 | T→C | T62A (ACC→GCC) | dmlR ← | DNA‑binding transcriptional regulator DmlR |
| RA | 1,922,460 | T→C | E170E (GAA→GAG) | pphA ← | phosphoprotein phosphatase 1 |
| RA | 1,970,991 | T→C | intergenic (‑7/+39) | tap ← / ← tar | methyl‑accepting chemotaxis protein Tap/methyl‑accepting chemotaxis protein Tar |
| RA | 1,972,741 | (G)6→7 | intergenic (‑50/+95) | tar ← / ← cheW | methyl‑accepting chemotaxis protein Tar/chemotaxis protein CheW |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,018,260 | (A)8→7 | coding (315/444 nt) | fliJ → | flagellar biosynthesis protein FliJ |
| RA | 2,061,601 | T→C | L111L (TTA→TTG) | nac ← | DNA‑binding transcriptional dual regulator Nac |
| RA | 2,072,889 | A→G | T451A (ACC→GCC) | flu → | CP4‑44 prophage; self recognizing antigen 43 (Ag43) autotransporter |
| RA | 2,077,174 | (G)5→6 | coding (63/369 nt) | cbeA → | CP4‑44 prophage; cytoskeleton bundling‑enhancing antitoxin CbeA |
| RA | 2,081,543 | A→G | G335G (GGT→GGC) | dacD ← | D‑alanyl‑D‑alanine carboxypeptidase DacD |
| RA | 2,117,670 | T→C | A245A (GCA→GCG) | wcaK ← | putative colanic acid biosynthesis pyruvyl transferase |
| RA | 2,147,047 | T→C | D165G (GAC→GGC) | alkA ← | DNA‑3‑methyladenine glycosylase 2 |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,183,628 | (T)7→8 | coding (24/819 nt) | yegX ← | putative hydrolase |
| RA | 2,232,517 | G→A | G225D (GGC→GAC) | cdd → | cytidine/deoxycytidine deaminase |
| RA | 2,254,047 | G→A | G33G (GGC→GGT) | nupX ← | putative nucleoside transporter |
| RA | 2,288,561 | (C)7→8 | pseudogene (354/2525 nt) | yejO ← | adhesin‑like autotransporter YejO |
| RA | 2,290,778 | C→T | S93S (AGC→AGT) | narP → | DNA‑binding transcriptional dual regulator NarP |
| MC | 2,304,678 | Δ282 bp | between other | eco → / ← mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
| RA | 2,446,579 | T→C | T299A (ACC→GCC) | aroC ← | chorismate synthase |
| RA | 2,449,457 | T→C | K198R (AAG→AGG) | yfcO ← | DUF2544 domain‑containing protein YfcO |
| RA | 2,462,889 | (C)9→8 | intergenic (+243/‑123) | fadL → / → yfdF | long‑chain fatty acid outer membrane channel/bacteriophage T2 receptor/protein YfdF |
| RA | 2,494,781 | T→C | G28G (GGT→GGC) | ypdI → | colanic acid synthesis putative lipoprotein YpdI |
| RA | 2,527,823 | T→C | V293A (GTG→GCG) | yfeH → | putative solute:Na(+) symporter |
| RA | 2,590,374 | T→C | V927A (GTG→GCG) | acrD → | multidrug efflux pump RND permease AcrD |
| RA | 2,602,233 | T→C | V139A (GTG→GCG) | hyfB → | hydrogenase 4 component B |
| RA | 2,603,102 | G→A | G429S (GGT→AGT) | hyfB → | hydrogenase 4 component B |
| RA | 2,682,157 | (C)7→6 | coding (589/3282 nt) | yphG ← | DUF5107 domain‑containing protein YphG |
| RA | 2,699,351 | C→T | A198V (GCG→GTG) | yfhH → | putative DNA‑binding transcriptional regulator YfhH |
| RA | 2,706,770 | C→T | A119T (GCC→ACC) | lepA ← | elongation factor 4 |
| RA | 2,715,149 | T→C | T58A (ACC→GCC) | yfiE ← | putative LysR‑type DNA‑binding transcriptional regulator YfiE |
| RA | 2,745,554 | T→C | Y122C (TAC→TGC) | rimM ← | ribosome maturation factor RimM |
| RA | 2,768,673 | T→C | R3R (CGT→CGC) | yfjQ → | CP4‑57 prophage; protein YfjQ |
| RA | 2,769,648 | (C)6→7 | intergenic (+162/‑55) | yfjQ → / → yfjR | CP4‑57 prophage; protein YfjQ/CP4‑57 prophage; putative DNA‑binding transcriptional regulator |
| RA | 2,809,415 | T→C | pseudogene (1100/1178 nt) | ygaY → | putative transporter YgaY, N‑terminal fragment |
| RA | 2,811,134 | A→G | H122R (CAC→CGC) | mprA → | DNA‑binding transcriptional repressor MprA |
| RA | 2,839,566 | G→A | A15T (GCA→ACA) | ascF → | beta‑glucoside specific PTS enzyme IIBC component |
| MC JC | 2,857,096 | Δ2,538 bp | coding (4‑2541/2562 nt) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,862,411 | T→C | L26P (CTA→CCA) | ygbK → | putative 3‑oxo‑tetronate kinase YgbK |
| RA | 2,865,178 | A→G | V26V (GTA→GTG) | ygbN → | putative transporter YgbN |
| RA | 2,949,993 | (T)5→6 | coding (752/1332 nt) | argA → | N‑acetylglutamate synthase |
| RA | 2,970,592 | T→C | V58A (GTT→GCT) | ygdQ → | UPF0053 inner membrane protein YgdQ |
| RA | 2,972,909 | (C)6→7 | coding (954/1194 nt) | lplT ← | lysophospholipid transporter |
| RA | 2,977,063 | T→C | C155C (TGT→TGC) | galR → | DNA‑binding transcriptional dual regulator GalR |
| RA | 2,984,896 | G→A | P233S (CCT→TCT) | yqeF ← | putative acyltransferase |
| RA | 2,986,581 | A→G | V245V (GTA→GTG) | yqeG → | putative transporter YqeG |
| RA | 2,999,680 | (G)7→8 | coding (212/756 nt) | ygeR ← | LysM domain‑containing putative peptidase lipoprotein YgeR |
| RA | 3,011,789 | T→C | V110A (GTT→GCT) | yqeA → | putative amino acid kinase YqeA |
| RA | 3,068,157 | T→C | intergenic (‑77/+16) | yggE ← / ← argO | uncharacterized protein YggE/L‑arginine exporter |
| RA | 3,105,207 | T→C | F259L (TTC→CTC) | mltC → | membrane‑bound lytic murein transglycosylase C |
| RA | 3,230,215 | T→C | V443A (GTG→GCG) | ygjK → | glycoside hydrolase |
| RA | 3,267,951 | T→C | V33A (GTA→GCA) | yhaB → | protein YhaB |
| RA | 3,284,795 | T→C | C37C (TGT→TGC) | agaC → | galactosamine‑specific PTS enzyme IIC component |
| RA | 3,304,813 | (C)7→6 | coding (1005/1245 nt) | mtr ← | tryptophan:H(+) symporter Mtr |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,388,726 | A→G | V134A (GTT→GCT) | aaeA ← | aromatic carboxylic acid efflux pump membrane fusion protein |
| RA | 3,436,053 | C→T | L283F (CTC→TTC) | rsmB → | 16S rRNA m(5)C967 methyltransferase |
| RA | 3,476,107 | A→G | S112P (TCC→CCC) | yheO ← | putative DNA‑binding transcriptional regulator YheO |
| RA | 3,526,366 | T→C | intergenic (‑217/‑103) | nudE ← / → igaA | ADP‑sugar diphosphatase NudE/inner membrane protein ‑ inhibits the Rcs signaling pathway |
| RA | 3,546,188 | T→C | S189P (TCC→CCC) | nfuA → | iron‑sulfur cluster carrier protein NfuA |
| RA | 3,546,376 | A→G | intergenic (+177/‑183) | nfuA → / → gntT | iron‑sulfur cluster carrier protein NfuA/high‑affinity gluconate transporter |
| RA | 3,551,116 | +G | coding (1358/2394 nt) | malP ← | maltodextrin phosphorylase |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,594,571 | G→A | L304L (CTG→TTG) | livM ← | branched chain amino acid/phenylalanine ABC transporter membrane subunit LivM |
| RA | 3,619,272 | T→C | R27R (CGT→CGC) | rhsB → | rhs element protein RhsB |
| RA | 3,627,990 | G→A | Q517* (CAG→TAG) | rbbA ← | ribosome‑associated ATPase |
| RA | 3,637,751 | A→C | N37T (AAC→ACC) | pitA → | metal phosphate:H(+) symporter PitA |
| RA | 3,707,324 | C→T | A128T (GCG→ACG) | dppA ← | dipeptide ABC transporter periplasmic binding protein |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,860,630 | (C)5→4 | coding (348/894 nt) | yidL → | putative DNA‑binding transcriptional regulator YidL |
| RA | 3,861,098 | A→G | K272K (AAA→AAG) | yidL → | putative DNA‑binding transcriptional regulator YidL |
| RA | 3,868,448 | G→A | H288Y (CAT→TAT) | yidR ← | DUF3748 domain‑containing galacturonate catabolism protein YidR |
| RA | 3,906,596 | (A)7→8 | intergenic (‑29/+257) | bglG ← / ← phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon |
| RA | 3,948,805 | (G)6→7 | coding (1165/1521 nt) | yifB ← | putative magnesium chelatase YifB |
| RA | 3,954,853 | A→G | D459G (GAC→GGC) | ilvD → | dihydroxy‑acid dehydratase |
| RA | 3,977,134 | Δ1 bp | coding (857/1251 nt) | wzxE → | lipid III flippase |
| RA | 4,028,640 | G→A | L45L (CTG→TTG) | fadA ← | 3‑ketoacyl‑CoA thiolase |
| RA | 4,051,495 | A→G | N50S (AAC→AGC) | yihI → | Der GTPase‑activating protein YihI |
| RA | 4,084,255 | Δ1 bp | coding (1568/3051 nt) | fdoG ← | formate dehydrogenase O subunit alpha |
| RA | 4,226,924 | A→G | T1033A (ACC→GCC) | metH → | cobalamin‑dependent methionine synthase |
| RA | 4,262,356 | A→G | K230E (AAG→GAG) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,277,869 | A→G | N134S (AAC→AGC) | soxR → | DNA‑binding transcriptional dual regulator SoxR |
| RA | 4,292,511 | A→G | I334V (ATC→GTC) | nrfE → | putative cytochrome c‑type biogenesis protein NrfE |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,304,978 | A→G | G540G (GGT→GGC) | yjcS ← | alkyl sulfatase |
| RA | 4,316,944 | A→G | V92A (GTA→GCA) | phnM ← | RPnTP hydrolase |
| RA | 4,335,825 | C→T | V403M (GTG→ATG) | adiC ← | arginine:agmatine antiporter |
| RA | 4,445,549 | A→G | T480A (ACC→GCC) | tamB → | translocation and assembly module subunit TamB |
| RA | 4,455,581 | Δ1 bp | coding (29/999 nt) | fbp ← | fructose‑1,6‑bisphosphatase 1 |
| RA | 4,456,162 | A→G | E126E (GAA→GAG) | mpl → | UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase |
| RA | 4,460,176 | A→G | R63R (CGT→CGC) | nrdG ← | anaerobic ribonucleoside‑triphosphate reductase activating protein |
| RA | 4,506,416 | C→T | intergenic (+11/‑32) | yjhC → / → ythA | KpLE2 phage‑like element; putative oxidoreductase YjhC/KpLE2 phage‑like element; uncharacterized protein YthA |
| RA | 4,511,128 | A→G | R110R (CGT→CGC) | fecE ← | ferric citrate ABC transporter ATP binding subunit |
| RA | 4,596,841 | C→T | S284S (AGC→AGT) | lgoD → | L‑galactonate oxidoreductase |
| RA | 4,606,215 | (G)8→9 | noncoding (72/87 nt) | leuP ← | tRNA‑Leu |
| RA | 4,606,330 | (G)8→9 | noncoding (72/87 nt) | leuQ ← | tRNA‑Leu |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1427841 | 1428032–1427972 | 132–192 | 17 [10] | [15] 18 | insH‑5 | Rac prophage; IS5 transposase and trans‑activator |
| * | * | ÷ | NC_000913 | 1428196–1428294 | 1428417–1428392 | 99–222 | 16 [15] | [14] 18 | insH‑5 | Rac prophage; IS5 transposase and trans‑activator |
| * | * | ÷ | NC_000913 | 3423755–3424234 | 3424533–3424239 | 6–779 | 18 [15] | [14] 16 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| * | * | ÷ | NC_000913 | 4171671–4171751 | 4171953–4171786 | 36–283 | 16 [15] | [13] 17 | [rrfB] | [rrfB] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 56 (1.020) | 44/266 | 0.2 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 65 (1.150) | 89 (1.590) | 58/272 | 0.0 | 73.1% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 1 (0.020) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 38 (0.670) | 30/274 | 0.8 | 86.4% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 6 (0.110) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 4542690 | 33 (0.580) | 18 (0.340) | 13/256 | 2.6 | 38.8% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 26 (0.490) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||