Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,597,640 C→T pseudogene (447/5422 nt) yneO ← AIDA‑I family autotransporter YneO

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,597,6400CT100.0% 180.1 / NA 51pseudogene (447/5422 nt)yneOAIDA‑I family autotransporter YneO
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (23/28);  total (23/28)

ATAGCTACCTATTTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACGCTGGTAGTAATAG  >  NC_000913/1597505‑1597773
                                                                                                                                       |                                                                                                                                     
aTAGCTACCTATTTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTcc                                                                                                                                   <  1:569635/140‑1 (MQ=255)
aTAGCTACCTATTTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTcc                                                                                                                                   <  2:381993/140‑1 (MQ=255)
      aCCTATTTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTc                                                                                                                             >  2:937010/1‑140 (MQ=255)
        cTATTTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCg                                                                                                                           >  1:285361/1‑140 (MQ=255)
          aTTTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGa                                                                                                                         <  1:572650/140‑1 (MQ=255)
            ttCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGAtt                                                                                                                       >  1:491529/1‑140 (MQ=255)
              cGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGa                                                                                                                     <  1:617987/140‑1 (MQ=255)
               gAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGAc                                                                                                                    <  2:452359/140‑1 (MQ=255)
                  taatTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCca                                                                                                                 <  2:154454/140‑1 (MQ=255)
                     ttCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACAt                                                                                                              >  2:147298/1‑140 (MQ=255)
                        ggTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTa                                                                                                           <  2:156376/140‑1 (MQ=255)
                                      agTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCatta                                                                                             >  1:208145/1‑140 (MQ=255)
                                           tctcCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTcc                                                                                        >  2:637850/1‑140 (MQ=255)
                                            ctcCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCg                                                                                       <  2:398078/140‑1 (MQ=255)
                                            ctcCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCg                                                                                       <  2:687244/140‑1 (MQ=255)
                                            ctcCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCg                                                                                       <  1:937010/140‑1 (MQ=255)
                                                       ttGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACaa                                                                            <  2:118193/140‑1 (MQ=255)
                                                       ttGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACaa                                                                            <  1:637850/140‑1 (MQ=255)
                                                               cccGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAgg                                                                    >  2:219500/1‑140 (MQ=255)
                                                                    cGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCa                                                               >  1:407257/1‑140 (MQ=255)
                                                                       ctcctGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCAccc                                                            <  1:816175/140‑1 (MQ=255)
                                                                        tcctGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCa                                                           >  2:203251/1‑140 (MQ=255)
                                                                         cctGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCaa                                                          >  1:838403/1‑140 (MQ=255)
                                                                                    aCCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACgg                                               <  1:125056/140‑1 (MQ=255)
                                                                                            tttaaTTGCCTCCCACCACGTGACCCTTCTGTTTAATAATCAGTGTCCCCGTTCCGGATTGGCCCAAATTTAAAAGCCCTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCctct                                       <  2:818521/137‑1 (MQ=255)
                                                                                            ttAACTAGCCTCCGTCGACGGGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTCGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGCTGCCctct                                       <  2:285361/140‑1 (MQ=255)
                                                                                            ttAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCctct                                       <  1:398017/140‑1 (MQ=255)
                                                                                              aaaTAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGa                                     >  1:26765/1‑140 (MQ=255)
                                                                                               aaTAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAg                                    >  1:626847/1‑140 (MQ=255)
                                                                                                aTAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGt                                   >  1:136653/1‑140 (MQ=255)
                                                                                                  aGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTcc                                 <  2:407257/140‑1 (MQ=255)
                                                                                                    ccTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTc                               >  1:724247/1‑140 (MQ=255)
                                                                                                    ccTCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTc                               >  2:62200/1‑140 (MQ=255)
                                                                                                      tCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACgg                                               <  2:402907/122‑1 (MQ=255)
                                                                                                      tCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACgg                                               >  1:402907/1‑122 (MQ=255)
                                                                                                      tCCATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCAt                             >  1:227976/1‑140 (MQ=255)
                                                                                                        cATCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTa                           >  2:563785/1‑140 (MQ=255)
                                                                                                         aTCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAg                          <  2:136653/140‑1 (MQ=255)
                                                                                                         aTCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAg                          >  1:138785/1‑140 (MQ=255)
                                                                                                          tCGACGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAgc                         <  1:62200/140‑1 (MQ=255)
                                                                                                              cGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCctct                                       <  1:117516/122‑1 (MQ=255)
                                                                                                              cGTGACCCTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCctct                                       >  2:117516/1‑122 (MQ=255)
                                                                                                                    ccTTCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACg               <  2:838403/140‑1 (MQ=255)
                                                                                                                      ttCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACGCt             <  1:147298/140‑1 (MQ=255)
                                                                                                                       tCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACg               <  2:803998/137‑1 (MQ=255)
                                                                                                                       tCTGTTTAATATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACg               >  1:803998/1‑137 (MQ=255)
                                                                                                                              aaTATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACGCTGgtagt       <  1:222530/138‑1 (MQ=255)
                                                                                                                              aaTATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACGCTGgtagt       >  2:222530/1‑138 (MQ=255)
                                                                                                                              aaTATTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACGCTGGTAGTaa     <  1:684532/140‑1 (MQ=255)
                                                                                                                                tatTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACGCTGGTAGTAATa   <  2:227976/140‑1 (MQ=255)
                                                                                                                                tatTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACGCTGGTAGTAATa   <  2:208145/140‑1 (MQ=255)
                                                                                                                                tatTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACGCTGGTAGTAATa   >  1:929100/1‑140 (MQ=255)
                                                                                                                                 atTCAGTGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACGCTGGTAGTAATAg  <  1:203251/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                     
ATAGCTACCTATTTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACGCTGGTAGTAATAG  >  NC_000913/1597505‑1597773

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑