Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,768,673	T→C	R3R (CGT→CGC)	yfjQ →	CP4‑57 prophage; protein YfjQ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,768,673	0	T	C	100.0%	268.2 / NA	74	R3R (CGT→CGC)	yfjQ	CP4‑57 prophage; protein YfjQ
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (44/30);  total (44/30)

TGTCAGTGGCCCGCGCTGTCTGGGATTTCTTCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGTCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACA  >  NC_000913/2768536‑2768800                                                                                                                                          |                                                                                                                                tgtCAGTGGCCCGCGCTGTCTGGGATTTCTTCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCt                                                                                                                               >  2:654346/1‑140 (MQ=255)   tCAGTGGCCCGCGCTGTCTGGGATTTCTTCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTgg                                                                                                                             >  2:252827/1‑140 (MQ=255)        ggCCCGCGCTGTCTGGGATTTCTTCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTcg                                                                                                                        <  1:361972/140‑1 (MQ=255)            cgcgCTGTCTGGGATTTCTTCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCt                                                                                                                    >  1:378572/1‑140 (MQ=255)             gcgcTGTCTGGGATTTCTTCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCtt                                                                                                                   >  2:512144/1‑140 (MQ=255)             gcgcTGTCTGGGATTTCTTCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCtt                                                                                                                   >  2:813527/1‑140 (MQ=255)                   tCTGGGATTTCTTCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGgcgc                                                                                                             >  1:434054/1‑140 (MQ=255)                      gggATTTCTTCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGTTTTGGCGCTGc                                                                                                          <  2:545057/140‑1 (MQ=255)                      gggATTTCTTCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGc                                                                                                          <  1:512144/140‑1 (MQ=255)                      gggATTTCTTCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGc                                                                                                          <  1:494279/140‑1 (MQ=255)                             cttcttctGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCtt                                                                                                   >  2:692410/1‑140 (MQ=255)                             cttcttctGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCtt                                                                                                   >  2:326574/1‑140 (MQ=255)                             cttcttctGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCtt                                                                                                   >  1:884677/1‑140 (MQ=255)                             cttcttctGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCtt                                                                                                   >  1:267331/1‑140 (MQ=255)                             cttcttctGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCtt                                                                                                   >  2:869005/1‑140 (MQ=255)                                          tttACTTCTGCCCTATTATTCTCCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGAcc                                                                                      <  2:884677/140‑1 (MQ=255)                                          tttAATTCTGCCCTATTATTCTCCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTa                                                                                                  <  1:234746/128‑1 (MQ=255)                                          tttAATTCTGCCCTATTATTCTCCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTa                                                                                                  >  2:234746/1‑128 (MQ=255)                                            tAATTCTGCCCTATTATTCTCCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGAccgt                                                                                    <  2:378572/140‑1 (MQ=255)                                                 cTGCCCTATTATTCTCCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGtt                                                                               <  2:290028/140‑1 (MQ=255)                                                  tGCCCTATTATTCTCCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGACTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTa                                                                              >  2:291269/1‑140 (MQ=255)                                                    cccTATTATTCTCCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGAcc                                                                                      >  1:427625/1‑130 (MQ=255)                                                    cccTATTATTCTCCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGAcc                                                                                      <  2:427625/130‑1 (MQ=255)                                                    cccTATTATTCTCCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAAc                                                                            >  1:870832/1‑140 (MQ=255)                                                              ctcCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGACTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAagag                                                                  >  2:177952/1‑140 (MQ=255)                                                                   aGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTaa                                                                             >  1:688286/1‑124 (MQ=255)                                                                   aGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTaa                                                                             <  2:688286/124‑1 (MQ=255)                                                                   aGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAaga                                                                   >  1:482964/1‑134 (MQ=255)                                                                   aGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAaga                                                                   <  2:482964/134‑1 (MQ=255)                                                                   aGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTAtt                                                             >  2:536238/1‑140 (MQ=255)                                                                   aGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTAtt                                                             >  2:901690/1‑140 (MQ=255)                                                                              aaGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGc                                                  <  1:654346/140‑1 (MQ=255)                                                                               aGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGcc                                                 >  2:819102/1‑140 (MQ=255)                                                                                gTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGccc                                                <  1:869005/140‑1 (MQ=255)                                                                                gTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGccc                                                <  1:326574/140‑1 (MQ=255)                                                                                    ggCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCg                                            >  2:524282/1‑140 (MQ=255)                                                                                           ctttctttATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAg                                     >  1:792088/1‑140 (MQ=255)                                                                                           ctttctttATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAg                                     >  1:552688/1‑140 (MQ=255)                                                                                                 ttATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGCGCCCAGCGTATTCAGTGAGGa                               <  1:826555/140‑1 (MQ=255)                                                                                                   aTTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATa                             >  2:306688/1‑140 (MQ=255)                                                                                                     ttGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGt                                    <  2:178487/131‑1 (MQ=255)                                                                                                     ttGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGt                                    >  1:178487/1‑131 (MQ=255)                                                                                                     ttGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATaaa                           >  2:623820/1‑140 (MQ=255)                                                                                                     ttGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATaaa                           >  2:820183/1‑140 (MQ=255)                                                                                                        ttttACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAacac                        <  1:692410/140‑1 (MQ=255)                                                                                                         tttACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACg                       >  2:452820/1‑140 (MQ=255)                                                                                                          ttACCCATACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGa                      >  1:384718/1‑140 (MQ=255)                                                                                                                 tACTGAGGAGTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGc               >  2:944105/1‑140 (MQ=255)                                                                                                                      aggagTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGa          >  2:893186/1‑140 (MQ=255)                                                                                                                       ggagTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGaa         >  1:851470/1‑140 (MQ=255)                                                                                                                       ggagTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGaa         <  2:870832/140‑1 (MQ=255)                                                                                                                        gagTCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAAc        >  1:715336/1‑140 (MQ=255)                                                                                                                           tCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCt     >  2:30488/1‑140 (MQ=255)                                                                                                                           tCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCt     >  1:947659/1‑140 (MQ=255)                                                                                                                           tCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCt     >  1:912402/1‑140 (MQ=255)                                                                                                                           tCTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCt     >  2:588885/1‑140 (MQ=255)                                                                                                                            cTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACg       <  2:21082/137‑1 (MQ=255)                                                                                                                            cTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACg       >  1:21082/1‑137 (MQ=255)                                                                                                                            cTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTa    <  1:291269/140‑1 (MQ=255)                                                                                                                            cTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTa    <  1:30488/140‑1 (MQ=255)                                                                                                                            cTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTa    <  2:715336/140‑1 (MQ=255)                                                                                                                            cTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTa    >  1:255068/1‑140 (MQ=255)                                                                                                                            cTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTa    <  1:588885/140‑1 (MQ=255)                                                                                                                            cTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTa    <  1:820183/140‑1 (MQ=255)                                                                                                                            cTGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTa    <  1:252827/140‑1 (MQ=255)                                                                                                                             tGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACg       >  1:833230/1‑136 (MQ=255)                                                                                                                             tGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACg       <  2:833230/136‑1 (MQ=255)                                                                                                                             tGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTac   <  2:912402/140‑1 (MQ=255)                                                                                                                             tGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTac   >  1:13376/1‑140 (MQ=255)                                                                                                                             tGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTac   >  1:669284/1‑140 (MQ=255)                                                                                                                             tGCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTac   <  2:13376/140‑1 (MQ=255)                                                                                                                             tGCTTATGACCCGCCTGGCTTCGCGCTCTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCACAGTG‑ACGCTaca  >  1:349105/1‑140 (MQ=18)                                                                                                                              gCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTaca  <  1:893186/140‑1 (MQ=255)                                                                                                                              gCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTaca  <  2:434054/140‑1 (MQ=255)                                                                                                                              gCTTATGACCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTaca  <  2:384718/140‑1 (MQ=255)                                                                                                                                     aCCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGTCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTaca  >  1:420048/1‑133 (MQ=255)                                                                                                                                     aCCCGCCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGTCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTaca  <  2:420048/133‑1 (MQ=255)                                                                                                                                          |                                                                                                                                TGTCAGTGGCCCGCGCTGTCTGGGATTTCTTCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTGTCGCAAGTGCGGCAGGGCTTTCTTTATTTGTTTTACCCATACTGAGGAGTCTGCTTATGACCCGTCTGGCTTCGCGCTTTGGCGCTGCAAATCTTATTCGCCGTGACCGTCCGTTAACCCGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACA  >  NC_000913/2768536‑2768800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑