Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 3,476,107 | A→G | S112P (TCC→CCC) | yheO ← | putative DNA‑binding transcriptional regulator YheO |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,476,107 | 0 | A | G | 98.2% | 191.1 / NA | 56 | S112P (TCC→CCC) | yheO | putative DNA‑binding transcriptional regulator YheO |
Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (30/25); total (30/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.64e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TGAACCGACATCCGGGGTTTCTGGCGGCACAAAGGTGCTCATAATCTGCGAGAAGGGAACATCAAGATTCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGACTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTGCAGCATACGTAGCGCCAGGTCAGTAATTGGCGAACCAATCTTCCGGCCTGTATGTTCACC > NC_000913/3475976‑3476242 | tGAACCGACATCCGGGGTTTCTGGCGGCACAAAGGTGCTCATAATCTGCGAGAAGGGAACATCAAGATTCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCtt > 2:772164/1‑135 (MQ=255) tGAACCGACATCCGGGGTTTCTGGCGGCACAAAGGTGCTCATAATCTGCGAGAAGGGAACATCAAGATTCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCtt < 1:772164/135‑1 (MQ=255) aTCCGGGGTTTCTGGCGGCACAAAGGTGCTCATAATCTGCGAGAAGGGAACATCAAGATTCATATTGATGCACAGCATACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATAcgccgc > 1:261134/1‑140 (MQ=255) gTTTCTGGCGGCACAAAGGTGCTCATAATCTGCGAGAAGGGAACATCAAGATTCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGgc < 2:10011/140‑1 (MQ=255) gTTTCTGGCGGCACAAAGGTGCTCATAATCTGCGAGAAGGGAACATCAAGATTCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGgc < 2:817389/140‑1 (MQ=255) gTTTCTGGCGGCACAAAGGTGCTCATAATCTGCGAGAAGGGAACATCAAGATTCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGACTTCATTAATACGCCGCTTTTGgc < 2:389041/140‑1 (MQ=255) ttCTGGCGGCACAAAGGTGCTCATAATCTGCGAGAAGGGAACATCAAGATTCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGgcgc < 2:210895/140‑1 (MQ=255) gcACAAAGGTGCTCATAATCTGCGAGAAGGGAACATCAAGATTCATATTGATGCACAGTAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAg < 1:315899/140‑1 (MQ=255) cacaAAGGTGCTCATAATCTGCGAGAAGGGAACATCAAGATTCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGgc > 2:224916/1‑129 (MQ=255) cacaAAGGTGCTCATAATCTGCGAGAAGGGAACATCAAGATTCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGgc < 1:224916/129‑1 (MQ=255) ggTGCTCATAATCTGCGAGAAGGGAACAGCAAGATTCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCAtt < 2:483517/140‑1 (MQ=255) tAATCTGCGAGAAGGGAACATCAAGATTCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACg < 2:83873/140‑1 (MQ=255) tCTGCGAGAAGGGAACATCAAGATTCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACgctg < 2:727773/140‑1 (MQ=255) tCTGCGAGAAGGGAACATCAAGATTCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACgctg > 1:92102/1‑140 (MQ=255) cGAGAAGGGAACATCAAGATTCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCa < 2:929456/123‑1 (MQ=255) cGAGAAGGGAACATCAAGATTCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCa > 1:929456/1‑123 (MQ=255) cGAGAAGGGAACATCAAGATTCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTAt > 2:829859/1‑140 (MQ=255) agaAGGGAACATCAAGATTCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATAGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATcc > 1:188492/1‑140 (MQ=255) aaGGGAACATCAAGATTCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGc < 1:303616/140‑1 (MQ=255) aaGGGAACATCAAGATTCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGCCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGc > 2:175040/1‑140 (MQ=255) cATCAAGATTCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTc < 1:575161/140‑1 (MQ=255) gATTCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCg > 1:429353/1‑140 (MQ=255) gATTCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCg > 1:364195/1‑140 (MQ=255) aTTCATATTGATGCACAGCATACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGt < 2:261134/140‑1 (MQ=255) aTTCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATAGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGt < 2:188492/140‑1 (MQ=255) ttCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTg > 2:181174/1‑140 (MQ=255) ttCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTg > 2:911633/1‑140 (MQ=255) tCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTgc < 2:92102/140‑1 (MQ=255) cATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTgca > 2:555538/1‑140 (MQ=255) atatTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTgcag > 1:54066/1‑140 (MQ=255) tatTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTgcagc > 2:57517/1‑140 (MQ=255) atTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTgcagca < 1:555538/140‑1 (MQ=255) atTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTgcagca > 2:883428/1‑140 (MQ=255) ttGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTGCAGCAt > 1:391088/1‑140 (MQ=255) cagACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTGCAGCATACGTAGCGCCa > 2:488422/1‑140 (MQ=255) cagACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTAGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTGCAGCATACGTAGCGCCa > 2:680853/1‑140 (MQ=255) gACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTgcagca > 2:113666/1‑126 (MQ=255) gACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTgcagca < 1:113666/126‑1 (MQ=255) gACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTGCAGCATACGTAGCGCCAgg > 1:171824/1‑140 (MQ=255) aCCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTGCAGCATACGTAGCGCCAGGt > 1:377327/1‑140 (MQ=255) aCCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTGCAGCATACGTAGCGCCAGGt > 2:530112/1‑140 (MQ=255) aCCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTGCAGCATACGTAGCGCCAGGt < 2:377327/140‑1 (MQ=255) ttACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTGCAGCATACGTAGCGCCAGGTCAGTa > 2:609398/1‑140 (MQ=255) cGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTGCAGCATACGTAGCGCCAGGTCAGTAATTgg > 2:732986/1‑140 (MQ=255) cGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTAGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTGCAGCATACGTAGCGCCAGGTCAGTAATTgg < 1:680853/140‑1 (MQ=255) cTGTTCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTGCAGCATACGTAGCGCCAGGTCAGTAATTGGCg < 1:530112/140‑1 (MQ=255) ttCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTGCAGCATACGTAGCGCCAGGTCAGTAATTGGCGAAc > 1:52877/1‑140 (MQ=255) ttCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTGCAGCATACGTAGCGCCAGGTCAGTAATTGGCGAAc > 1:371228/1‑140 (MQ=255) ttCGCGGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTGCAGCATACGTAGCGCCAGGTCAGTAATTGGCGAAc > 2:199789/1‑140 (MQ=255) cgcgGTTACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTGCAGCATACGTAGCGCCAGGTCAGTAATTGGCGAACCa < 1:732986/140‑1 (MQ=255) tACGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTGCAGCATACGTAGCGCCAGGTCAGTAATTGGCGAACCAATCTTc < 2:171824/140‑1 (MQ=255) cGAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTGCAGCATACGTAGCGCCAGGTCAGTAATTGGCGAACCAATCTTCCg > 1:779079/1‑140 (MQ=255) gAATCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTGCAGCATACGTAGCGCCAGGTCAGTAATTGGCGAACCAATCTTCCgg < 1:175040/140‑1 (MQ=255) aTCGCGATAGTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTGCAGCATACGTAGCGCCAGGTCAGTAATTGGCGAACCAATCTTCCGGcc < 1:829859/140‑1 (MQ=255) gTCAGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTGCAGCATACGTAGCGCCAGGTCAGTAATTGGCGAACCAATCTTCCGGCCTGTATGTTc < 1:57517/140‑1 (MQ=255) aGGGGCTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTGCAGCATACGTAGCGCCAGGTCAGTAATTGGCGAACCAATCTTCCGGCCTGTATGTTCAcc > 1:2018/1‑140 (MQ=255) | TGAACCGACATCCGGGGTTTCTGGCGGCACAAAGGTGCTCATAATCTGCGAGAAGGGAACATCAAGATTCATATTGATGCACAGCAGACCAATTACACGCTGTTCGCGGTTACGAATCGCGATAGTCAGGGACTTCATTAATACGCCGCTTTTGGCGCGAGTAAAGTAGCATTTAGAAACGCTGCTATCCGCTCCCGTCATATCGTGCAGCATACGTAGCGCCAGGTCAGTAATTGGCGAACCAATCTTCCGGCCTGTATGTTCACC > NC_000913/3475976‑3476242 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |