Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 2
25 2 4
26 2 4
27 3 6
28 3 6
5 11 22

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 22 246
Multiple Base Substitutions 1 16
Deletions 6 86
Insertions 2 44
Mobile Element Insertions 1 2
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 32 394

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 16 0 45.4 1569754 92.6% 1453592 145.6
A0 F0 I1 R1 16 0 45.4 1569754 92.6% 1453592 145.6
A25 F14 I1 R1 16 0 29.6 1028478 93.3% 959569 143.8
A25 F14 I1 R1 16 0 29.6 1028478 93.3% 959569 143.8
A25 F65 I1 R1 18 0 32.7 1136616 94.2% 1070692 143.0
A25 F65 I1 R1 18 0 32.7 1136616 94.2% 1070692 143.0
A26 F14 I1 R1 18 0 28.6 998686 93.6% 934770 142.9
A26 F14 I1 R1 18 0 28.6 998686 93.6% 934770 142.9
A26 F25 I1 R1 19 0 25.2 880364 92.3% 812575 144.0
A26 F25 I1 R1 19 0 25.2 880364 92.3% 812575 144.0
A27 F14 I1 R1 21 0 47.8 1667578 92.3% 1539174 144.4
A27 F14 I1 R1 21 0 47.8 1667578 92.3% 1539174 144.4
A27 F24 I1 R1 21 0 31.9 1107862 92.3% 1022556 144.9
A27 F24 I1 R1 21 0 31.9 1107862 92.3% 1022556 144.9
A27 F65 I1 R1 17 0 32.7 1170216 91.9% 1075428 141.8
A27 F65 I1 R1 17 0 32.7 1170216 91.9% 1075428 141.8
A28 F14 I1 R1 16 0 48.1 1685906 92.4% 1557777 144.1
A28 F14 I1 R1 16 0 48.1 1685906 92.4% 1557777 144.1
A28 F25 I1 R1 17 0 59.4 2087794 94.4% 1970877 140.5
A28 F25 I1 R1 17 0 59.4 2087794 94.4% 1970877 140.5
A28 F66 I1 R1 18 0 38.6 1348160 93.6% 1261877 142.7
A28 F66 I1 R1 18 0 38.6 1348160 93.6% 1261877 142.7

Mutation Needle Plot

Mutation Targets

Entries to show