Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 1
1 2 53
2 3 54

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 352 3408
Multiple Base Substitutions 0 0
Deletions 48 592
Insertions 7 76
Mobile Element Insertions 0 0
Amplifications 90 115
Gene Conversions 0 0
Inversions 0 0
Total 497 4191

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 3 0 57.3 3828570 94.4% 3614170 84.4
A1 F1 I163 R2 3 0 67.4 4184522 95.4% 3992033 83.8
A1 F1 I164 R2 3 0 39.1 2496214 95.2% 2376395 83.6
A1 F1 I167 R2 3 0 73.4 4580044 94.4% 4323561 83.6
A1 F1 I168 R2 5 0 0.0 0 0.0% 0 0.0
A1 F1 I171 R2 5 0 16.1 989330 95.6% 945799 85.1
A1 F1 I178 R2 5 0 19.9 1206538 94.7% 1142591 84.1
A1 F1 I179 R2 4 0 15.4 992998 94.0% 933418 83.4
A1 F1 I186 R2 8 0 24.6 1531012 95.8% 1466709 85.8
A1 F1 I187 R2 6 0 23.1 1435966 95.1% 1365603 84.5
A1 F1 I188 R2 3 0 28.7 1681193 95.1% 1598814 84.5
A1 F1 I189 R2 1 0 26.9 1622034 94.1% 1526333 83.5
A1 F1 I190 R1 1 0 32.1 1948002 94.2% 1835017 83.5
A1 F1 I191 R1 4 0 28.5 1785710 94.7% 1691067 84.1
A1 F1 I192 R1 3 0 50.2 3125578 94.6% 2956796 83.9
A1 F1 I193 R1 5 0 20.3 1169676 96.1% 1124058 86.2
A1 F2 I194 R1 197 0 32.2 1845014 95.2% 1756453 85.4
A1 F2 I195 R1 222 0 27.1 1551108 96.0% 1489063 86.0
A1 F2 I196 R1 3 0 18.2 1013968 97.0% 983548 86.5
A1 F2 I197 R1 189 0 12.7 697584 97.1% 677354 86.2
A1 F2 I198 R1 96 0 36.2 2313912 84.6% 1957569 85.2
A1 F2 I199 R1 220 0 57.5 3163680 97.0% 3068769 86.1
A1 F2 I200 R1 216 0 30.8 1683622 97.2% 1636480 87.0
A1 F2 I201 R1 4 0 35.3 1949590 96.5% 1881354 85.7
A1 F2 I202 R1 3 0 42.2 2248258 97.5% 2192051 86.8
A1 F2 I203 R1 4 0 36.0 2027912 97.0% 1967074 86.4
A1 F2 I204 R1 2 0 48.7 2644746 96.6% 2554824 86.1
A1 F2 I205 R1 220 0 17.5 961422 97.1% 933540 86.5
A1 F2 I206 R1 206 0 23.7 1314362 96.8% 1272302 86.2
A1 F2 I207 R1 218 0 45.0 2482936 97.1% 2410930 86.1
A1 F2 I208 R1 222 0 13.1 731276 96.6% 706412 85.9
A1 F2 I209 R1 216 0 14.4 815930 96.1% 784108 85.2
A1 F2 I210 R1 226 0 19.6 1130256 95.4% 1078264 84.4
A1 F2 I211 R1 223 0 18.0 1007644 96.3% 970361 85.7
A1 F2 I212 R1 5 0 34.2 1909364 96.1% 1834898 86.0
A1 F2 I213 R1 8 0 41.3 2526560 96.1% 2428024 85.4
A1 F2 I214 R1 12 0 15.1 924212 96.1% 888167 85.5
A1 F2 I215 R1 7 0 24.6 1459714 95.1% 1388188 84.6
A1 F2 I216 R1 8 0 28.7 1753078 96.2% 1686461 85.5
A1 F2 I217 R1 10 0 20.8 1414158 96.8% 1368904 86.5
A1 F2 I218 R1 11 0 14.7 995888 96.1% 957048 85.5
A1 F2 I219 R1 10 0 16.2 1094186 96.4% 1054795 86.1
A1 F2 I220 R1 9 0 22.2 1497724 96.2% 1440810 85.7
A1 F2 I221 R1 7 0 18.7 1143996 96.4% 1102812 86.0
A1 F2 I222 R1 6 0 25.9 1502420 97.3% 1461854 86.7
A1 F2 I223 R1 9 0 19.6 1358936 97.3% 1322244 86.8
A1 F2 I224 R1 7 0 23.0 1302986 97.5% 1270411 87.2
A1 F2 I225 R1 227 0 21.4 1179702 97.1% 1145490 86.5
A1 F2 I226 R1 11 0 18.7 1257054 96.4% 1211800 86.0
A1 F2 I227 R1 223 0 21.3 1167702 97.0% 1132670 86.4
A1 F2 I228 R1 214 0 26.5 1448192 97.1% 1406194 86.4
A1 F2 I229 R1 214 0 17.4 943020 97.5% 919444 87.1
A1 F2 I230 R1 226 0 18.8 1048726 96.7% 1014118 86.4
A1 F2 I231 R1 218 0 12.8 703680 97.2% 683976 86.9

Mutation Needle Plot

Mutation Targets

Entries to show