mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,791 | G→A | intergenic (+160/‑32) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 356981 | 357568 | 588 | 2 [0] | [0] 5 | lacA | galactoside O‑acetyltransferase |
| * | * | ÷ | NZ_CP009273 | 1375444 | 1375467 | 24 | 2 [1] | [0] 3 | BW25113_RS06905 | ABC transporter ATP‑binding protein |
| * | * | ÷ | NZ_CP009273 | 1494544 | 1494554 | 11 | 3 [1] | [1] 3 | ydcK | YdcK family protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 51 (1.910) | 26/170 | 0.1 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | = 410424 | 9 (0.370) | 3 (0.120) +CGG |
3/150 | 1.8 | 23.9% | coding (786/3147 nt) | sbcC | exonuclease subunit SbcC |
| ? | NZ_CP009273 | 410425 = | 10 (0.370) | coding (785/3147 nt) | sbcC | exonuclease subunit SbcC | |||||
| * | ? | NZ_CP009273 | 1203246 = | 21 (0.790) | 8 (0.370) | 8/138 | 0.8 | 40.0% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | 1205075 = | 7 (0.320) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 3938351 | NA (NA) | 3 (0.120) | 3/158 | 1.9 | 51.8% | noncoding (1288/2904 nt) | BW25113_RS19530 | 23S ribosomal RNA |
| ? | NZ_CP009273 | = 4032158 | 3 (0.110) | noncoding (1280/2905 nt) | BW25113_RS19995 | 23S ribosomal RNA | |||||
| * | ? | NZ_CP009273 | 4532499 = | 8 (0.300) | 18 (0.750) | 14/152 | 0.4 | 64.1% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | 4532813 = | 13 (0.550) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
| * | ? | NZ_CP009273 | = 4532507 | 8 (0.300) | 13 (0.550) | 10/152 | 0.7 | 56.4% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | = 4532803 | 13 (0.550) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||