New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 410424	9 (0.370)	3 (0.120) +CGG	3/150	1.8	23.9%	coding (786/3147 nt)	sbcC	exonuclease subunit SbcC
	?	NZ_CP009273	410425 =	10 (0.370)					coding (785/3147 nt)	sbcC	exonuclease subunit SbcC

CGGTTGTGCCAGACTAAGCGCCGCCAGTTGAGGTTGCGCTTTTTCTTCTTCGGCTAACGCCTGTTGCAAGGCCTGCTGACGGC‑GGCTGGCTTCTTGCTGCAATTCGTCCTGACGCGTTAACCAGTTTAGCGATTGTTGTTCTTGCTGCTGCGCGGTAATTAA  >  NZ_CP009273/410346‑410507                                                                                |                                                                                    cGGTTGTGCCAGACTAAGCGCCGCCAGTTGAGGTTGCGCTTTTTCTTCTTCGGCTAACGCCTGTTGCAAGGCCTGCTGACGGC‑ggctggc                                                                          >  1:33684/1‑90 (MQ=255)         gactaagcgccgccagttgaggttgcgctttttcttcttcggctaacgcctgttgcaaggcctgctgacggCGGCTGGCTGGCTTCTtgc                                                                   >  1:115455‑M2/72‑90 (MQ=255)           aGACTAAGCGCCGCCAGTTGAGGTTGCGCTTTTTCTTCTTCGGCTAACGCCTGTTGCAAGGCCTGCTGACGGC‑GGCTGGCTTCTtgctgc                                                                >  1:649209/1‑90 (MQ=255)               tAAGCGCCGCCAGTTGAGGTTGCGCTTTTTCTTCTTCGGCTAACGCCTGTTGCAAGGCCTGCTGACGGC‑GGCTGGCTTCTTGCTGCAAtt                                                            <  2:232724/90‑1 (MQ=255)                   cgccagttgaggttgcgctttttcttcttcggctaacgcctgttgcaaggcctgctgacggCGGC‑GGCTGGCTTCTTGCTGCAATTCGTc                                                        >  2:50910‑M2/62‑90 (MQ=255)                                ggTTGCGCTTTTTCTTCTTCGGCTAACGCCTGTTGCAAGGCCTGCTGACGGC‑GGCTGGCTTCTTGCTGCAATTCGTCCTGACGCGTTAAc                                           <  1:248363/90‑1 (MQ=255)                                                cggctaacgcctgttgcaaggcctgctgacggCGGC‑GGCTGGCTTCTTGCTGCAATTCGTCCTGACGCGTTAACCAGTTTAGCGAttgtt                           <  1:50910‑M2/58‑1 (MQ=255)                                                   cGGCTAACGCCTGTTGCAAGGCCTGCTGACGGC‑GGCTGGCTTCTTGCTGCAATTCGTCCTGACGCGTTAACCAGTTTAGCGATTgttgtt                        <  1:318728/90‑1 (MQ=255)                                                                ttGCAAGGCCTGCTGACGGC‑GGCTGGCTTCTTGCTGCAATTCGTCCTGACGCGTTAACCAGTTTAGCGATTGTTGTTCTTGCTGCTgcgc           <  1:639144/90‑1 (MQ=255)                                                                ttGCAAGGCCTGCTGACGGC‑GGCTGGCTTCTTGCTGCAATTCGTCCTGACGCGTTAACCAGTTTAGCGATTGTTGTTCTTGCTGCTgcgc           <  2:403328/90‑1 (MQ=255)                                                                ttGCAAGGCCTGCTGACGGC‑GGCTGGCTTCTTGCTGCAATTCGTCCTGACGCGTTAACCAGTTTAGCGATTGTTGTTCTTGCTGCTgcgc           <  2:649209/90‑1 (MQ=255)                                                                  gCAAGGCCTGCTGACGGC‑GGCTGGCTTCTTGCTGCAATTCGTCCTGACGCGTTAACCAGTTTAGCGATTGTTGTTCTTGCTGCTGCGCgg         <  2:186235/90‑1 (MQ=255)                                                                         ctgctgACGGC‑GGCTGGCTTCTTGCTGCAATTCGTCCTGACGCGTTAACCAGTTTAGCGATTGTTGTTCTTGCTGCTGCGCGGTAATTaa  >  1:80225/1‑90 (MQ=255)                                                                                |                                                                                    CGGTTGTGCCAGACTAAGCGCCGCCAGTTGAGGTTGCGCTTTTTCTTCTTCGGCTAACGCCTGTTGCAAGGCCTGCTGACGGC‑GGCTGGCTTCTTGCTGCAATTCGTCCTGACGCGTTAACCAGTTTAGCGATTGTTGTTCTTGCTGCTGCGCGGTAATTAA  >  NZ_CP009273/410346‑410507

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.