| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 410424 | 9 (0.370) | 3 (0.120) +CGG |
3/150 | 1.8 | 23.9% | coding (786/3147 nt) | sbcC | exonuclease subunit SbcC |
| ? | NZ_CP009273 | 410425 = | 10 (0.370) | coding (785/3147 nt) | sbcC | exonuclease subunit SbcC | |||||
AGATTTCGTGCCGGTTGTGCCAGACTAAGCGCCGCCAGTTGAGGTTGCGCTTTTTCTTCTTCGGCTAACGCCTGTTGCAAGGCCTGCTGACGGCGGCTGGCTTCTTGCTGCAATTCGTCCTGACGCGTTAACCAGTTTAGCGATTGTTGTTCTTGCTGCTGCGCGGTAATTAA > NZ_CP009273/410335‑410507 | aGATTTCGTGCCGGTTGTGCCAGACTAAGCGCCGCCAGTTGAGGTTGCGCTTTTTCTTCTTCGGCTAACGCCTGTTGCAAGGCCTGCTGa > 2:306893/1‑90 (MQ=255) cGGTTGTGCCAGACTAAGCGCCGCCAGTTGAGGTTGCGCTTTTTCTTCTTCGGCTAACGCCTGTTGCAAGGCCTGCTGACGGCggctggc > 1:33684/1‑90 (MQ=255) aGACTAAGCGCCGCCAGTTGAGGTTGCGCTTTTTCTTCTTCGGCTAACGCCTGTTGCAAGGCCTGCTGACGGCGGCTGGCTTCTtgctgc > 1:649209/1‑90 (MQ=255) gACTAAGCGCCGCCAGTTGAGGTTGCGCTTTTTCTTCTTCGGCTAACGCCTGTTGCAAGGCCTGCTGAcggcggctggctggcttcttgc > 1:115455‑M1/1‑68 (MQ=255) tAAGCGCCGCCAGTTGAGGTTGCGCTTTTTCTTCTTCGGCTAACGCCTGTTGCAAGGCCTGCTGACGGCGGCTGGCTTCTTGCTGCAAtt < 2:232724/90‑1 (MQ=255) cgccAGTTGAGGTTGCGCTTTTTCTTCTTCGGCTAACGCCTGTTGCAAGGCCTGCTGAcggcggcggctggcttcttgctgcaattcgtc > 2:50910‑M1/1‑58 (MQ=255) ggTTGCGCTTTTTCTTCTTCGGCTAACGCCTGTTGCAAGGCCTGCTGACGGCGGCTGGCTTCTTGCTGCAATTCGTCCTGACGCGTTAAc < 1:248363/90‑1 (MQ=255) cGGCTAACGCCTGTTGCAAGGCCTGCTGAcggcggcggctggcttcttgctgcaattcgtcctgacgcgttaaccagtttagcgattgtt < 1:50910‑M1/90‑62 (MQ=255) cGGCTAACGCCTGTTGCAAGGCCTGCTGACGGCGGCTGGCTTCTTGCTGCAATTCGTCCTGACGCGTTAACCAGTTTAGCGATTgttgtt < 1:318728/90‑1 (MQ=255) ttGCAAGGCCTGCTGACGGCGGCTGGCTTCTTGCTGCAATTCGTCCTGACGCGTTAACCAGTTTAGCGATTGTTGTTCTTGCTGCTgcgc < 1:639144/90‑1 (MQ=255) ttGCAAGGCCTGCTGACGGCGGCTGGCTTCTTGCTGCAATTCGTCCTGACGCGTTAACCAGTTTAGCGATTGTTGTTCTTGCTGCTgcgc < 2:403328/90‑1 (MQ=255) ttGCAAGGCCTGCTGACGGCGGCTGGCTTCTTGCTGCAATTCGTCCTGACGCGTTAACCAGTTTAGCGATTGTTGTTCTTGCTGCTgcgc < 2:649209/90‑1 (MQ=255) gCAAGGCCTGCTGACGGCGGCTGGCTTCTTGCTGCAATTCGTCCTGACGCGTTAACCAGTTTAGCGATTGTTGTTCTTGCTGCTGCGCgg < 2:186235/90‑1 (MQ=255) ctgctgACGGCGGCTGGCTTCTTGCTGCAATTCGTCCTGACGCGTTAACCAGTTTAGCGATTGTTGTTCTTGCTGCTGCGCGGTAATTaa > 1:80225/1‑90 (MQ=255) | AGATTTCGTGCCGGTTGTGCCAGACTAAGCGCCGCCAGTTGAGGTTGCGCTTTTTCTTCTTCGGCTAACGCCTGTTGCAAGGCCTGCTGACGGCGGCTGGCTTCTTGCTGCAATTCGTCCTGACGCGTTAACCAGTTTAGCGATTGTTGTTCTTGCTGCTGCGCGGTAATTAA > NZ_CP009273/410335‑410507 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |