mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 63 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 766,353 | 0 | T | G | 66.7% | ‑0.6 / 16.9 | 24 | intergenic (+286/‑561) | mngB/cydA | mannosylglycerate hydrolase/cytochrome ubiquinol oxidase subunit I |
| * | NZ_CP009273 | 2,621,984 | 0 | A | C | 66.7% | ‑2.0 / 17.1 | 21 | V105G (GTC→GGC) | pdeF | cyclic‑guanylate‑specific phosphodiesterase PdeF |
| * | NZ_CP009273 | 536,014 | 0 | T | G | 61.5% | 5.5 / 11.7 | 13 | intergenic (+50/‑7) | allB/ybbY | allantoinase AllB/uracil/xanthine transporter |
| * | NZ_CP009273 | 585,386 | 0 | A | G | 60.0% | 0.2 / 20.9 | 20 | L342P (CTC→CCC) | nfrA | bacteriophage adsorption protein NfrA |
| * | NZ_CP009273 | 3,171,099 | 0 | A | C | 60.0% | 17.6 / 23.1 | 20 | G57G (GGT→GGG) | nudF | ADP‑ribose diphosphatase |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 59.6% | ‑2.0 / 56.8 | 52 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 59.6% | 1.5 / 56.3 | 52 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 937,169 | 0 | T | G | 58.8% | 1.2 / 18.8 | 17 | V252G (GTG→GGG) | dmsA | dimethylsulfoxide reductase subunit A |
| * | NZ_CP009273 | 520,722 | 0 | T | G | 57.9% | 4.9 / 20.0 | 19 | V669G (GTA→GGA) | rhsD | rhs element protein RhsD |
| * | NZ_CP009273 | 40,515 | 0 | G | T | 57.1% | 23.5 / 39.9 | 28 | Q473K (CAA→AAA) | caiT | L‑carnitine/gamma‑butyrobetaine antiporter |
| * | NZ_CP009273 | 585,390 | 0 | T | G | 57.1% | 11.7 / 25.8 | 21 | T341P (ACC→CCC) | nfrA | bacteriophage adsorption protein NfrA |
| * | NZ_CP009273 | 822,955 | 0 | T | G | 57.1% | 7.0 / 14.9 | 14 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 1,906,007 | 0 | T | G | 57.1% | 5.2 / 13.2 | 14 | H276P (CAC→CCC) | htpX | protease HtpX |
| * | NZ_CP009273 | 766,356 | 0 | A | G | 56.5% | 8.9 / 19.6 | 24 | intergenic (+289/‑558) | mngB/cydA | mannosylglycerate hydrolase/cytochrome ubiquinol oxidase subunit I |
| * | NZ_CP009273 | 517,106 | 0 | T | G | 56.2% | 9.3 / 16.4 | 16 | V412G (GTA→GGA) | ybbP | ABC transporter permease |
| * | NZ_CP009273 | 2,380,362 | 0 | C | T | 56.2% | ‑1.8 / 17.9 | 16 | intergenic (+52/‑51) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 1,504,652 | 0 | C | A | 55.6% | 4.1 / 13.1 | 9 | S131R (AGC→AGA) | ydcR | PLP‑dependent aminotransferase family protein |
| * | NZ_CP009273 | 1,673,561 | 0 | A | C | 55.6% | 13.9 / 17.3 | 18 | Y293S (TAC→TCC) | ydgH | DUF1471 family protein YdgH |
| * | NZ_CP009273 | 3,090,826 | 0 | T | G | 55.6% | 15.6 / 26.7 | 27 | G67G (GGT→GGG) | hemW | radical SAM family heme chaperone HemW |
| * | NZ_CP009273 | 3,171,107 | 0 | C | A | 55.6% | ‑1.3 / 20.3 | 18 | E55* (GAG→TAG) | nudF | ADP‑ribose diphosphatase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 356433 = | 62 (2.320) | 4 (0.170) | 4/152 | 1.6 | 7.7% | coding (731/1155 nt) | cynX | cyanate transporter CynX |
| ? | NZ_CP009273 | 356536 = | 40 (1.680) | coding (834/1155 nt) | cynX | cyanate transporter CynX | |||||
| * | ? | NZ_CP009273 | = 3738194 | 31 (1.270) | 4 (0.160) +TGGG |
3/148 | 1.8 | 11.3% | coding (31/1278 nt) | yiaN | 2,3‑diketo‑L‑gulonate transporter large permease YiaN |
| ? | NZ_CP009273 | 3738195 = | 32 (1.200) | coding (32/1278 nt) | yiaN | 2,3‑diketo‑L‑gulonate transporter large permease YiaN | |||||
| * | ? | NZ_CP009273 | = 3862293 | 36 (1.350) | 3 (0.120) | 3/154 | 1.9 | 8.6% | coding (344/1215 nt) | yidR | DUF3748 domain‑containing protein |
| ? | NZ_CP009273 | = 3862343 | 31 (1.280) | coding (294/1215 nt) | yidR | DUF3748 domain‑containing protein | |||||