| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3862293 | 36 (1.350) | 3 (0.120) | 3/154 | 1.9 | 8.6% | coding (344/1215 nt) | yidR | DUF3748 domain‑containing protein |
| ? | NZ_CP009273 | = 3862343 | 31 (1.280) | coding (294/1215 nt) | yidR | DUF3748 domain‑containing protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAAC > NZ_CP009273/3862259‑3862432 | gccgccGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTccgcg < 1:524085‑M2/90‑6 (MQ=255)gccgccGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTccgcg < 1:449002‑M2/90‑6 (MQ=255) ccgccgCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTccgcgc < 1:77221‑M2/90‑7 (MQ=255) ccgcGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCga < 1:431408/90‑1 (MQ=255) cgcgCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCgat < 2:704242/90‑1 (MQ=255) gcaCTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGa < 1:377000/90‑1 (MQ=255) caCTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGaa < 1:704814/90‑1 (MQ=255) cTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTccgcgccgtatacgccagg > 2:687875‑M2/1‑71 (MQ=255) ggCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTaa < 1:171354/90‑1 (MQ=255) ataCGGCGCGGTAATATCCATCGCATCAAGGTTCCTCATCTTGCCGCCTTCAACAATCACTccgcgccgtatacgccaggagtgctgcgc > 1:398310‑M2/1‑61 (MQ=255) ataCGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCa > 2:324453/1‑90 (MQ=255) gcgcGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGGTGATGGAAGTCGTAATGCCATGttt > 1:313068/1‑90 (MQ=255) gcgcGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGttt > 2:349755/1‑90 (MQ=255) gcgcGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGttt > 1:643317/1‑90 (MQ=255) cgGTAATATCCATCGCATCAAGGTTCCTCATCTTGCCGCCTTCAACAATCACTccgcgccgtatacgccaggagtgctgcgcggcggcag > 1:750850‑M2/1‑53 (MQ=255) atatCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGa < 2:335873/90‑1 (MQ=255) tCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCg > 1:120586/1‑90 (MQ=255) tCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCg > 2:197133/1‑90 (MQ=255) tCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCg > 2:520774/1‑90 (MQ=255) gCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCggg > 1:80890/1‑90 (MQ=255) aTCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGcc > 1:271817/1‑90 (MQ=255) cAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGt < 2:737318/90‑1 (MQ=255) cAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGt < 1:526300/90‑1 (MQ=255) gTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGAt < 2:120886/90‑1 (MQ=255) tACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGa > 1:148677/1‑90 (MQ=255) aCTCATCTTGCCGCCTTCAACAATCCCTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGaa < 1:406969/90‑1 (MQ=255) aCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGaa > 1:662895/1‑90 (MQ=255) aCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGaa < 2:169577/90‑1 (MQ=255) aCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGaa > 1:538777/1‑90 (MQ=255) aCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGaa > 2:592614/1‑90 (MQ=255) tCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGaaaa < 2:609680/90‑1 (MQ=255) tcatGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACat > 1:137618/4‑90 (MQ=255) gccTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTtctc < 2:148677/90‑1 (MQ=255) gccTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTtctc < 2:517410/90‑1 (MQ=255) acaaTCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTc < 1:194183/90‑1 (MQ=255) cTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGaa < 1:592614/90‑1 (MQ=255) tCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAAc > 1:116211/1‑90 (MQ=255) | GCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAAC > NZ_CP009273/3862259‑3862432 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |