| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3862293 | 36 (1.350) | 3 (0.120) | 3/154 | 1.9 | 8.6% | coding (344/1215 nt) | yidR | DUF3748 domain‑containing protein |
| ? | NZ_CP009273 | = 3862343 | 31 (1.280) | coding (294/1215 nt) | yidR | DUF3748 domain‑containing protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGTCGTTATAGGTAAAGCTCACCCTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/3862201‑3862293‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgcggAGTGATTGTTGAAGGCGGCAAGATGAGTAACCTTGATGCGATGGATATTACCGCGCCGTATACGCCAGGAGTGCTGCGCGGCGGC < NZ_CP009273/3862343‑3862259 GGTCGTTATAGGTAAAGCTCACCCTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCG < 1:563714/90‑1 GTCGTTATAGGTAAAGCTCCCCCTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGC < 1:521562/90‑1 GTCGTTATAGGTAAAGCTCACCCTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGC < 1:25114/90‑1 GTCGTTATAGGTAAAGCTCACCCTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGC < 1:559544/90‑1 TCGTTATAGGTAAAGCTCACCCTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGC < 1:330016/89‑1 TCGTTATAGGTAAAGCTCACCCTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGC > 2:330016/1‑89 GTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGC > 1:30931/1‑60 GTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGC < 2:30931/60‑1 CTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGAGTGATTGTTGAAGGCGGCAAGATGAGGAACCTTGATGCGATGGATATTACCG > 1:750850/1‑90 GCGCAGCACTCCTGGCGTATACGGCGCGGAGTGATTGTTGAAGGCGGCAAGATGAGGAACCTTGATGCGATGGATATTACCGCGCCGTAT > 1:398310/1‑90 CCTGGCGTATACGGCGCGGAGTGATTGTTGAAGGCGGCAAGATGAGTAACCTTGATGCGATGGATATTACCGCGCCGTATACGCCAGGAG > 2:687875/1‑90 GCGCGGAGTGATTGTTGAAGGCGGCAAGATGAGTAACCTTGATGCGATGGATATTACCGCGCCGTATACGCCAGGAGTGCTGCGCGGCGG < 1:77221/90‑1 CGCGGAGTGATTGTTGAAGGCGGCAAGATGAGTAACCTTGATGCGATGGATATTACCGCGCCGTATACGCCAGGAGTGCTGCGCGGCGGC < 1:449002/90‑1 CGCGGAGTGATTGTTGAAGGCGGCAAGATGAGTAACCTTGATGCGATGGATATTACCGCGCCGTATACGCCAGGAGTGCTGCGCGGCGGC < 1:524085/90‑1 GGTCGTTATAGGTAAAGCTCACCCTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/3862201‑3862293‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgcggAGTGATTGTTGAAGGCGGCAAGATGAGTAACCTTGATGCGATGGATATTACCGCGCCGTATACGCCAGGAGTGCTGCGCGGCGGC < NZ_CP009273/3862343‑3862259 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |