| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3862293 | 36 (1.350) | 3 (0.120) | 3/154 | 1.9 | 8.6% | coding (344/1215 nt) | yidR | DUF3748 domain‑containing protein |
| ? | NZ_CP009273 | = 3862343 | 31 (1.280) | coding (294/1215 nt) | yidR | DUF3748 domain‑containing protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTTATAGGTAAAGCTCACCCTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCAT > NZ_CP009273/3862205‑3862380 | gTTATAGGTAAAGCTCACCCTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGt > 1:687838/1‑90 (MQ=255) gTAAAGCTCACCCTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATcc > 1:335873/1‑90 (MQ=255) aaaGCTCACCCTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCAt < 2:764500/90‑1 (MQ=255) aaaGCTCACCCTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCAt < 1:317297/90‑1 (MQ=255) aaGCTCACCCTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATc < 2:422272/90‑1 (MQ=255) tCACCCTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCAt < 2:687838/90‑1 (MQ=255) cACCCTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATc > 1:737318/1‑90 (MQ=255) cACCCTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATc > 1:704242/1‑90 (MQ=255) aCCCTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCa > 1:466768/1‑90 (MQ=255) cccTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATc < 2:752123/88‑1 (MQ=255) cccTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATc > 1:752123/1‑88 (MQ=255) ttCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCAt > 1:231108/1‑78 (MQ=255) ttCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCAt < 2:231108/78‑1 (MQ=255) ttCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGtt > 2:343963/1‑90 (MQ=255) ttCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGtt > 2:511739/1‑90 (MQ=255) tCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTa > 2:162527/1‑90 (MQ=255) gTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCAt > 2:431293/1‑72 (MQ=255) gTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCAt < 1:431293/72‑1 (MQ=255) gTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATc < 2:74006/78‑1 (MQ=255) gTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATc > 1:74006/1‑78 (MQ=255) gTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCAt > 1:492526/1‑90 (MQ=255) gTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCAt > 1:395731/1‑90 (MQ=255) aaGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCt > 2:667006/1‑90 (MQ=255) gACAGGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTc > 1:747107/1‑90 (MQ=255) aCATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTca < 2:478985/90‑1 (MQ=255) cATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTcaa > 2:431408/1‑90 (MQ=255) aTGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTA‑ACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTcaaca > 2:526300/1‑90 (MQ=255) cTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGagtgattgttgaaggcggcaagatgaggaaccttgatgcgatggatattaccg > 1:750850‑M1/1‑37 (MQ=255) gccgccGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTccgcg < 1:449002‑M2/90‑6 (MQ=255) gccgccGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTccgcg < 1:524085‑M2/90‑6 (MQ=255) ccgccgCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTccgcgc < 1:77221‑M2/90‑7 (MQ=255) ccgcGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCga < 1:431408/90‑1 (MQ=255) cgcgCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCgat < 2:704242/90‑1 (MQ=255) gcgcAGCACTCCTGGCGTATACGGCGCGGagtgattgttgaaggcggcaagatgaggaaccttgatgcgatggatattaccgcgccgtat > 1:398310‑M1/1‑29 (MQ=255) gcaCTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGa < 1:377000/90‑1 (MQ=255) caCTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGaa < 1:704814/90‑1 (MQ=255) cTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTccgcgccgtatacgccagg > 2:687875‑M2/1‑71 (MQ=255) ccTGGCGTATACGGCGCGGagtgattgttgaaggcggcaagatgagtaaccttgatgcgatggatattaccgcgccgtatacgccaggag > 2:687875‑M1/1‑19 (MQ=255) ggCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTaa < 1:171354/90‑1 (MQ=255) ataCGGCGCGGTAATATCCATCGCATCAAGGTTCCTCATCTTGCCGCCTTCAACAATCACTccgcgccgtatacgccaggagtgctgcgc > 1:398310‑M2/1‑61 (MQ=255) ataCGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCa > 2:324453/1‑90 (MQ=255) gcgcGGagtgattgttgaaggcggcaagatgagtaaccttgatgcgatggatattaccgcgccgtatacgccaggagtgctgcgcggcgg < 1:77221‑M1/90‑85 (MQ=255) gcgcGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGGTGATGGAAGTCGTAATGCCATGttt > 1:313068/1‑90 (MQ=255) gcgcGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGttt > 2:349755/1‑90 (MQ=255) gcgcGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGttt > 1:643317/1‑90 (MQ=255) cgcgGagtgattgttgaaggcggcaagatgagtaaccttgatgcgatggatattaccgcgccgtatacgccaggagtgctgcgcggcggc < 1:449002‑M1/90‑86 (MQ=255) cgcgGagtgattgttgaaggcggcaagatgagtaaccttgatgcgatggatattaccgcgccgtatacgccaggagtgctgcgcggcggc < 1:524085‑M1/90‑86 (MQ=255) cgGTAATATCCATCGCATCAAGGTTCCTCATCTTGCCGCCTTCAACAATCACTccgcgccgtatacgccaggagtgctgcgcggcggcag > 1:750850‑M2/1‑53 (MQ=255) | GTTATAGGTAAAGCTCACCCTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCAT > NZ_CP009273/3862205‑3862380 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |