New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 3938351	NA (NA)	3 (0.120)	3/158	1.9	51.8%	noncoding (1288/2904 nt)	BW25113_RS19530	23S ribosomal RNA
	?	NZ_CP009273	= 4032158	3 (0.110)					noncoding (1280/2905 nt)	BW25113_RS19995	23S ribosomal RNA

GCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGC  >  NZ_CP009273/4032072‑4032247                                                                                       |                                                                                          gCGTTCTGTAAGCCTGTGAAGGGGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGAAACGATAAAGCGGGcga                                                                                        <  1:490132‑M2/90‑4 (MQ=255)  cGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaa                                                                                       >  1:644336/1‑90 (MQ=33)                gtgAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCg                                                                         >  1:518777/1‑90 (MQ=32)                gtgAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCg                                                                         >  1:589496/1‑90 (MQ=32)                             gtgAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGcttttcacccgctttatcgttacttatgtca                                                            <  1:652783‑M2/90‑32 (MQ=255)                                              tATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGcttttcacccgctttatcgttacttatgtcagcattcgcacttctgat                                           <  1:698258‑M2/90‑49 (MQ=255)                                                                                   gCGGGcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatgcctcacagcacaccttcgcaggctt      <  1:224522‑M2/90‑86 (MQ=255)                                                                                   gCGGGcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatgcctcacagcacaccttcgcaggctt      <  1:762193‑M2/90‑86 (MQ=255)                                                                                   gCGGGcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatgcctcacagcacaccttcgcaggctt      <  2:648768‑M2/90‑86 (MQ=255)                                                                                      ggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatgcctcacagcacaccttcgcaggcttaca   >  1:222880‑M2/1‑2 (MQ=255)                                                                                      ggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatgcctcacagcacaccttcgcaggcttaca   >  2:267982‑M2/1‑2 (MQ=255)                                                                                       gcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcaagcctcacagcacaccttcgcaggcttacag  >  2:609536‑M2/1‑1 (MQ=255)                                                                                       gcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccaacatgcctcacagcacaccttcgcaggcttacag  >  1:727748‑M2/1‑1 (MQ=255)                                                                                       |                                                                                          GCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGC  >  NZ_CP009273/4032072‑4032247

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.