mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,736 | A→T | intergenic (+105/‑87) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
| RA | 49,903 | T→A | D27E (GAT→GAA) | folA → | type 3 dihydrofolate reductase |
| RA | 50,280 | T→C | F153S (TTT→TCT) | folA → | type 3 dihydrofolate reductase |
| RA | 56,392 | A→C | Y240D (TAC→GAC) | lptD ← | LPS assembly protein LptD |
| RA | 98,192 | T→C | I314T (ATT→ACT) | murC → | UDP‑N‑acetylmuramate‑‑L‑alanine ligase |
| RA | 108,362 | A→G | F242S (TTC→TCC) | zapD ← | cell division protein ZapD |
| RA | 115,488 | T→C | F90S (TTC→TCC) | ampD → | 1,6‑anhydro‑N‑acetylmuramyl‑L‑alanine amidase AmpD |
| RA | 115,628 | A→C | T137P (ACG→CCG) | ampD → | 1,6‑anhydro‑N‑acetylmuramyl‑L‑alanine amidase AmpD |
| RA | 139,618 | A→G | E118G (GAA→GGA) | yadG → | ABC transporter ATP‑binding protein |
| RA | 209,716 | T→C | I300T (ATC→ACC) | tilS → | tRNA lysidine(34) synthetase TilS |
| RA | 221,335 | T→C | noncoding (1078/1542 nt) | BW25113_RS01010 → | 16S ribosomal RNA |
| RA | 231,042 | A→C | G76G (GGT→GGG) | gloB ← | hydroxyacylglutathione hydrolase |
| RA | 264,689 | (A)5→4 | intergenic (‑18/+311) | ykfA ← / ← perR | GTPase family protein/LysR substrate‑binding domain‑containing protein |
| RA | 297,509 | G→C | G30G (GGC→GGG) | paoB ← | aldehyde oxidoreductase FAD‑binding subunit PaoB |
| RA | 340,444 | (A)5→4 | coding (558/816 nt) | BW25113_RS01680 → | hypothetical protein |
| RA | 354,025 | T→C | E126G (GAA→GGA) | cynR ← | transcriptional regulator CynR |
| RA | 386,045 | T→C | pseudogene (339/1527 nt) | BW25113_RS01915 → | outer membrane autotransporter barrel domain‑containing protein |
| RA | 444,519 | G→A | R527C (CGT→TGT) | cyoB ← | cytochrome o ubiquinol oxidase subunit I |
| RA | 463,972 | A→G | D45G (GAC→GGC) | decR → | DNA‑binding transcriptional regulator DecR |
| RA | 465,464 | T→C | S380P (TCG→CCG) | mdlA → | SmdA family multidrug ABC transporter permease/ATP‑binding protein |
| RA | 475,878 | T→C | D96G (GAT→GGT) | tomB ← | Hha toxicity modulator TomB |
| RA | 476,525 | A→G | intergenic (‑361/+185) | tomB ← / ← acrB | Hha toxicity modulator TomB/efflux RND transporter permease AcrB |
| RA | 502,414 | T→C | D42G (GAT→GGT) | ybaK ← | Cys‑tRNA(Pro)/Cys‑tRNA(Cys) deacylase YbaK |
| RA | 508,601 | (C)6→7 | coding (570/1293 nt) | ybaT → | APC family permease |
| RA | 539,223 | C→G | A94P (GCC→CCC) | allE ← | (S)‑ureidoglycine aminohydrolase |
| RA | 539,975 | A→G | D258D (GAT→GAC) | allC ← | allantoate deiminase |
| RA | 554,427 | A→G | intergenic (+217/‑3) | fimA → / → fimC | type 1 fimbrial major subunit FimA/type 1 fimbria chaperone FimC |
| RA | 568,752 | A→G | G71G (GGA→GGG) | ybcO → | DUF1364 domain‑containing protein |
| RA | 579,943 | (T)8→7 | intergenic (+57/+193) | appY → / ← ompT | DNA‑binding transcriptional activator AppY/omptin family outer membrane protease OmpT |
| RA | 592,895 | A→C | L103F (TTA→TTC) | cusF → | Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone CusF |
| RA | 601,986 | A→G | F285S (TTC→TCC) | ybdK ← | YbdK family carboxylate‑amine ligase |
| RA | 609,731 | A→G | D40G (GAT→GGT) | entF → | enterobactin non‑ribosomal peptide synthetase EntF |
| RA | 661,892 | A→C | G594G (GGT→GGG) | mrdA ← | peptidoglycan DD‑transpeptidase MrdA |
| RA | 674,442 | T→G | T141P (ACT→CCT) | ybeT ← | tetratricopeptide repeat protein |
| RA | 818,875 | A→G | N107N (AAT→AAC) | clsB ← | cardiolipin synthase ClsB |
| RA | 866,539 | C→G | A39A (GCC→GCG) | gsiC → | glutathione ABC transporter permease GsiC |
| RA | 874,237 | C→T | L14F (CTT→TTT) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 886,189 | A→G | G7G (GGT→GGC) | grxA ← | glutaredoxin 1 |
| RA | 951,809 | T→G | T94P (ACC→CCC) | ycaO ← | 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO |
| RA | 979,260 | T→C | I52T (ATC→ACC) | gloC → | hydroxyacylglutathione hydrolase GloC |
| RA | 987,365 | A→G | N430D (AAT→GAT) | pepN → | aminopeptidase N |
| RA | 991,969 | T→G | L144F (TTA→TTC) | ssuA ← | aliphatic sulfonate ABC transporter substrate‑binding protein SsuA |
| RA | 1,021,663 | (A)5→4 | coding (1737/2055 nt) | helD → | DNA helicase IV |
| RA | 1,054,234 | A→G | E232G (GAA→GGA) | torC → | pentaheme c‑type cytochrome TorC |
| RA | 1,062,210 | T→C | G390G (GGT→GGC) | agp → | bifunctional glucose‑1‑phosphatase/inositol phosphatase |
| RA | 1,065,426 | T→G | T129P (ACC→CCC) | rutF ← | pyrimidine utilization flavin reductase protein F |
| RA | 1,076,727 | (T)5→4 | intergenic (+458/‑85) | putP → / → BW25113_RS05295 | sodium/proline symporter PutP/FTR1 family protein |
| RA | 1,110,952 | T→C | intergenic (‑6/+166) | mdtG ← / ← lpxL | multidrug efflux MFS transporter MdtG/kdo(2)‑lipid IV(A) lauroyltransferase |
| RA | 1,122,270 | (A)6→5 | coding (9/924 nt) | yceM → | Gfo/Idh/MocA family oxidoreductase |
| RA | 1,153,703 | A→T | I127F (ATC→TTC) | ptsG → | PTS glucose transporter subunit IIBC |
| RA | 1,174,665 | T→G | L206W (TTG→TGG) | nagK → | N‑acetylglucosamine kinase |
| RA | 1,223,232 | (A)8→7 | coding (63/294 nt) | BW25113_RS06140 → | YcgL domain‑containing protein |
| RA | 1,230,259 | C→T | intergenic (‑86/‑135) | nhaB ← / → fadR | Na(+)/H(+) antiporter NhaB/fatty acid metabolism transcriptional regulator FadR |
| RA | 1,240,670 | Δ1 bp | coding (55/441 nt) | BW25113_RS06225 → | hypothetical protein |
| RA | 1,259,173 | A→G | T2A (ACC→GCC) | hemA → | glutamyl‑tRNA reductase |
| RA | 1,276,251 | Δ1 bp | coding (932/3744 nt) | narG → | nitrate reductase subunit alpha |
| RA | 1,320,565 | G→A | Q521Q (CAG→CAA) | yciQ → | DUF2207 domain‑containing protein |
| RA | 1,325,886 | T→C | G194G (GGT→GGC) | topA → | type I DNA topoisomerase |
| RA | 1,331,016 | A→G | Y310C (TAT→TGT) | acnA → | aconitate hydratase AcnA |
| RA | 1,336,062 | A→G | intergenic (+78/‑116) | lapB → / → pyrF | lipopolysaccharide assembly protein LapB/orotidine‑5'‑phosphate decarboxylase |
| RA | 1,363,696 | T→C | F16S (TTC→TCC) | pspD → | phage shock protein PspD |
| RA | 1,392,826 | T→C | Q18Q (CAA→CAG) | uspE ← | universal stress protein UspE |
| RA | 1,394,163 | G→A | L111L (CTG→TTG) | ogt ← | methylated‑DNA‑‑[protein]‑cysteine S‑methyltransferase |
| RA | 1,394,663 | T→C | G456G (GGA→GGG) | abgT ← | p‑aminobenzoyl‑glutamate transporter |
| RA | 1,402,000 | A→G | I18T (ATC→ACC) | dgcM ← | diguanylate cyclase DgcM |
| RA | 1,417,788 | (C)6→7 | coding (69/120 nt) | BW25113_RS26130 ← | hypothetical protein |
| RA | 1,423,602 | T→C | R99R (CGT→CGC) | stfR → | prophage tail fiber N‑terminal domain‑containing protein |
| RA | 1,431,536 | T→C | E1169G (GAA→GGA) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 1,434,377 | A→G | F222S (TTC→TCC) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 1,454,774 | A→G | D16G (GAT→GGT) | paaI → | hydroxyphenylacetyl‑CoA thioesterase PaaI |
| RA | 1,494,123 | T→C | E195G (GAA→GGA) | ydcK ← | YdcK family protein |
| RA | 1,499,566 | A→G | S258P (TCC→CCC) | ydcO ← | BenE family transporter YdcO |
| RA | 1,502,076 | A→G | N347D (AAC→GAC) | rlhA → | 23S rRNA 5‑hydroxycytidine C2501 synthase |
| RA | 1,503,965 | T→C | D67D (GAT→GAC) | hicB → | type II toxin‑antitoxin system antitoxin HicB |
| RA | 1,505,430 | A→G | K391E (AAA→GAA) | ydcR → | PLP‑dependent aminotransferase family protein |
| RA | 1,524,815 | T→C | intergenic (‑54/‑28) | BW25113_RS25600 ← / → BW25113_RS07655 | protein YncO/ISAs1 family transposase |
| RA | 1,531,275 | G→A | L98L (CTG→TTG) | narW ← | nitrate reductase molybdenum cofactor assembly chaperone |
| RA | 1,547,935 | A→G | V54A (GTA→GCA) | adhP ← | alcohol dehydrogenase AdhP |
| RA | 1,558,439 | A→G | Y518H (TAT→CAT) | dosP ← | oxygen‑sensing cyclic‑di‑GMP phosphodiesterase |
| RA | 1,573,157 | A→T | I148N (ATC→AAC) | yddA ← | ABC transporter ATP‑binding protein/permease |
| RA | 1,575,825 | A→T | D319E (GAT→GAA) | ydeN ← | sulfatase |
| RA | 1,576,388 | A→G | S132P (TCC→CCC) | ydeN ← | sulfatase |
| RA | 1,579,109 | A→C | G545G (GGT→GGG) | ydeP ← | acid resistance putative oxidoreductase YdeP |
| RA | 1,595,655 | A→G | intergenic (‑157/‑92) | lsrR ← / → lsrA | transcriptional regulator LsrR/autoinducer 2 ABC transporter ATP‑binding protein LsrA |
| RA | 1,632,437 | (T)7→6 | intergenic (‑71/+8) | BW25113_RS08135 ← / ← BW25113_RS25620 | hypothetical protein/hypothetical protein |
| RA | 1,634,151 | Δ1 bp | coding (164/534 nt) | rrrQ ← | lysozyme |
| RA | 1,649,476 | A→G | intergenic (‑78/+128) | rspA ← / ← ynfA | starvation‑sensing protein RspA/YnfA family protein |
| RA | 1,659,576 | T→C | F14S (TTC→TCC) | clcB → | voltage‑gated ClC‑type chloride channel ClcB |
| RA | 1,662,649 | T→G | H58P (CAC→CCC) | mlc ← | DNA‑binding transcriptional repressor Mlc |
| RA | 1,671,899 | T→G | T88P (ACG→CCG) | pntA ← | Re/Si‑specific NAD(P)(+) transhydrogenase subunit alpha |
| RA | 1,673,542 | A→G | K287E (AAG→GAG) | ydgH → | DUF1471 family protein YdgH |
| RA | 1,673,785 | T→C | intergenic (+157/‑29) | ydgH → / → ydgI | DUF1471 family protein YdgH/amino acid permease |
| RA | 1,717,498 | G→C | G374A (GGC→GCC) | ydhK → | FUSC family protein |
| RA | 1,803,201 | A→G | V97A (GTC→GCC) | yniB ← | YniB family protein |
| RA | 1,807,028 | T→C | E121G (GAA→GGA) | BW25113_RS09050 ← | hypothetical protein |
| RA | 1,812,807 | (C)7→8 | intergenic (‑50/+55) | celF ← / ← chbR | 6‑phospho‑beta‑glucosidase/transcriptional regulator ChbR |
| RA | 1,818,956 | T→G | K80T (AAA→ACA) | ves ← | environmental stress‑induced protein Ves |
| RA | 1,838,813 | T→C | I106V (ATT→GTT) | ynjI ← | DUF1266 domain‑containing protein |
| RA | 1,840,928 | T→C | E97G (GAA→GGA) | topB ← | DNA topoisomerase III |
| RA | 1,844,118 | A→G | E342G (GAA→GGA) | sppA → | signal peptide peptidase SppA |
| RA | 1,848,011 | T→C | T76A (ACT→GCT) | ydjE ← | MFS transporter |
| RA | 1,854,126 | T→C | M121V (ATG→GTG) | ydjK ← | MFS transporter |
| RA | 1,877,816 | T→C | pseudogene (408/1482 nt) | yeaV → | BCCT family transporter YeaV |
| RA | 1,897,230 | A→G | D309G (GAT→GGT) | manX → | PTS mannose transporter subunit IIAB |
| RA | 1,900,885 | A→G | S145P (TCC→CCC) | rlmA ← | 23S rRNA (guanine(745)‑N(1))‑methyltransferase |
| RA | 1,903,061 | A→T | intergenic (‑38/‑121) | mgrB ← / → yobH | PhoP/PhoQ regulator MgrB/YobH family protein |
| RA | 1,927,010 | T→C | K2E (AAA→GAA) | kdgA ← | bifunctional 4‑hydroxy‑2‑oxoglutarate aldolase/2‑dehydro‑3‑deoxy‑phosphogluconate aldolase |
| RA | 1,934,547 | T→C | intergenic (‑97/+23) | lpxM ← / ← mepM | lauroyl‑Kdo(2)‑lipid IV(A) myristoyltransferase/murein DD‑endopeptidase MepM |
| RA | 1,941,604 | A→C | G10G (GGT→GGG) | ruvC ← | crossover junction endodeoxyribonuclease RuvC |
| RA | 1,965,782 | T→G | E389D (GAA→GAC) | tar ← | methyl‑accepting chemotaxis protein II |
| RA | 1,966,502 | Δ1 bp | coding (447/1662 nt) | tar ← | methyl‑accepting chemotaxis protein II |
| RA | 1,972,691 | A→G | intergenic (‑237/‑543) | flhD ← / → uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| RA | 1,980,420 | A→G | G5G (GGA→GGG) | ftnB → | non‑heme ferritin‑like protein |
| RA | 2,003,480 | T→C | F60S (TTC→TCC) | yedK → | SOS response‑associated peptidase |
| RA | 2,012,918 | A→G | D351G (GAC→GGC) | fliK → | flagellar hook‑length control protein FliK |
| RA | 2,038,183 | (T)5→4 | intergenic (+78/‑236) | BW25113_RS10330 → / → yeeJ | tRNA‑Asn/inverse autotransporter adhesin YeeJ |
| RA | 2,057,664 | T→C | G95G (GGA→GGG) | cobT ← | nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase |
| RA | 2,061,342 | T→A | intergenic (‑576/‑774) | BW25113_RS10415 ← / → BW25113_RS24005 | IS5‑like element IS5 family transposase/TonB‑dependent receptor plug domain‑containing protein |
| RA | 2,064,259 | T→G | V93G (GTG→GGG) | BW25113_RS10440 → | GTPase family protein |
| RA | 2,102,646 | T→C | G140G (GGA→GGG) | wzx ← | O16 family O‑antigen flippase |
| RA | 2,122,267 | A→C | S35A (TCG→GCG) | wcaF ← | colanic acid biosynthesis acetyltransferase WcaF |
| RA | 2,140,422 | G→C | G200G (GGC→GGG) | alkA ← | DNA‑3‑methyladenine glycosylase 2 |
| RA | 2,174,381 | T→G | C270G (TGC→GGC) | yegU → | ADP‑ribosylglycohydrolase family protein |
| RA | 2,176,805 | T→G | D109A (GAC→GCC) | yegX ← | glycoside hydrolase family 25 protein |
| RA | 2,189,312 | A→G | T512A (ACC→GCC) | metG → | methionine‑‑tRNA ligase |
| RA | 2,202,171 | G→C | W242C (TGG→TGC) | yehP → | VWA domain‑containing protein |
| RA | 2,202,478 | T→G | Y345D (TAT→GAT) | yehP → | VWA domain‑containing protein |
| RA | 2,220,044 | A→G | S236P (TCG→CCG) | yohF ← | SDR family oxidoreductase |
| RA | 2,229,956 | A→G | K405E (AAA→GAA) | preA → | NAD‑dependent dihydropyrimidine dehydrogenase subunit PreA |
| RA | 2,283,874 | Δ1 bp | intergenic (‑350/‑105) | BW25113_RS11435 ← / → narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP |
| RA | 2,284,519 | T→C | S181P (TCC→CCC) | narP → | nitrate/nitrite response regulator protein NarP |
| RA | 2,345,414 | T→G | H147P (CAC→CCC) | glpT ← | glycerol‑3‑phosphate transporter |
| RA | 2,358,446 | Δ1 bp | coding (414/426 nt) | nudI → | nucleoside triphosphatase NudI |
| RA | 2,396,099 | G→C | A413G (GCC→GGC) | nuoC ← | NADH‑quinone oxidoreductase subunit C/D |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| RA | 2,410,868 | A→T | G103G (GGA→GGT) | yfcC → | putative basic amino acid antiporter YfcC |
| RA | 2,425,778 | T→C | E215G (GAA→GGA) | folC ← | bifunctional tetrahydrofolate synthase/dihydrofolate synthase |
| RA | 2,434,529 | A→C | F186V (TTT→GTT) | fabB ← | beta‑ketoacyl‑ACP synthase I |
| RA | 2,439,101 | T→C | K255E (AAG→GAG) | mepA ← | penicillin‑insensitive murein endopeptidase |
| RA | 2,492,074 | (T)5→4 | intergenic (‑300/‑76) | alaC ← / → ypdA | alanine transaminase/two‑component system sensor histidine kinase YpdA |
| RA | 2,505,777 | T→C | I137V (ATC→GTC) | mntH ← | Nramp family divalent metal transporter |
| RA | 2,526,050 | A→G | T95A (ACC→GCC) | cysK → | cysteine synthase A |
| RA | 2,536,106 | T→C | E261G (GAA→GGA) | cysP ← | thiosulfate/sulfate ABC transporter substrate‑binding protein CysP |
| RA | 2,554,121 | A→C | N169T (AAC→ACC) | BW25113_RS12740 → | hypothetical protein |
| RA | 2,661,508 | T→G | T250P (ACC→CCC) | hcaR ← | DNA‑binding transcriptional regulator HcaR |
| RA | 2,670,359 | T→C | G454G (GGA→GGG) | yphE ← | sugar ABC transporter ATP‑binding protein |
| RA | 2,678,723 | A→C | G48G (GGT→GGG) | glyA ← | serine hydroxymethyltransferase |
| RA | 2,726,562 | (T)5→4 | coding (971/2574 nt) | clpB ← | ATP‑dependent chaperone ClpB |
| RA | 2,739,096 | T→C | E61G (GAA→GGA) | rimM ← | ribosome maturation factor RimM |
| RA | 2,751,237 | A→G | V241V (GTT→GTC) | BW25113_RS13685 ← | hypothetical protein |
| RA | 2,753,169 | T→C | S276P (TCA→CCA) | yfjI → | YfjI family protein |
| RA | 2,778,934 | (T)6→5 | intergenic (‑564/+187) | BW25113_RS25705 ← / ← BW25113_RS13825 | DUF5507 domain‑containing protein/tRNA‑Ile |
| RA | 2,797,377 | (T)5→4 | coding (517/960 nt) | nrdF → | class 1b ribonucleoside‑diphosphate reductase subunit beta |
| RA | 2,801,112 | A→C | T208P (ACC→CCC) | proX → | glycine betaine/L‑proline ABC transporter substrate‑binding protein ProX |
| RA | 2,814,267 | A→G | A368A (GCT→GCC) | alaS ← | alanine‑‑tRNA ligase |
| RA | 2,818,451 | T→C | E162G (GAA→GGA) | mltB ← | lytic murein transglycosylase B |
| RA | 2,819,095 | T→C | intergenic (‑160/‑96) | mltB ← / → srlA | lytic murein transglycosylase B/PTS glucitol/sorbitol transporter subunit IIC |
| RA | 2,833,262 | T→G | V127G (GTC→GGC) | ascF → | PTS cellobiose/arbutin/salicin transporter subunit IIBC |
| RA | 2,849,816 | T→C | E117G (GAA→GGA) | ygbA ← | nitrous oxide‑stimulated promoter family protein |
| RA | 2,859,998 | T→C | I305V (ATT→GTT) | rpoS ← | RNA polymerase sigma factor RpoS |
| RA | 2,882,413 | A→C | V349G (GTT→GGT) | cysI ← | assimilatory sulfite reductase (NADPH) hemoprotein subunit |
| RA | 2,982,555 | T→C | F232S (TTC→TCC) | yqeI → | transcriptional regulator |
| RA | 2,995,567 | A→G | T635A (ACC→GCC) | xdhA → | xanthine dehydrogenase molybdenum‑binding subunit XdhA |
| RA | 3,002,903 | T→C | S261P (TCA→CCA) | ygeY → | YgeY family selenium metabolism‑linked hydrolase |
| RA | 3,011,010 | A→G | E531G (GAA→GGA) | ygfK → | putative selenate reductase subunit YgfK |
| RA | 3,098,336 | Δ1 bp | coding (545/1080 nt) | mltC → | membrane‑bound lytic murein transglycosylase MltC |
| RA | 3,103,871 | (A)7→6 | intergenic (+71/+78) | BW25113_RS15410 → / ← yghD | tRNA‑Phe/GspM family type II secretion system protein YghD |
| RA | 3,113,649 | T→G | K330N (AAA→AAC) | glcA ← | glycolate permease GlcA |
| RA | 3,179,271 | G→A | A167T (GCC→ACC) | ygiL → | fimbrial‑like protein |
| RA | 3,273,721 | A→G | E49G (GAA→GGA) | agaV → | PTS N‑acetylgalactosamine transporter subunit IIB |
| RA | 3,318,468 | A→C | A609A (GCT→GCG) | ftsH ← | ATP‑dependent zinc metalloprotease FtsH |
| RA | 3,347,716 | A→G | intergenic (‑307/‑368) | yhcC ← / → gltB | TIGR01212 family radical SAM protein/glutamate synthase large subunit |
| RA | 3,458,386 | A→G | E369G (GAA→GGA) | gspL → | type II secretion system protein GspL |
| RA | 3,475,701 | T→C | S352P (TCG→CCG) | yheS → | ABC transporter ATP‑binding protein |
| RA | 3,505,986 | T→C | intergenic (‑283/+7) | BW25113_RS17530 ← / ← trpS | GntR family transcriptional regulator YhfZ/tryptophan‑‑tRNA ligase |
| RA | 3,535,339 | T→C | F525S (TTC→TCC) | feoB → | Fe(2+) transporter permease subunit FeoB |
| RA | 3,576,634 | A→G | R79R (CGA→CGG) | BW25113_RS17825 → | YrhA family protein |
| RA | 3,579,168 | T→C | E339G (GAA→GGA) | ggt ← | gamma‑glutamyltransferase |
| RA | 3,624,386 | T→C | E522G (GAA→GGA) | yhiJ ← | YhiJ/YhiL family protein |
| RA | 3,728,024 | A→C | S315S (TCA→TCC) | xylH → | xylose ABC transporter permease XylH |
| RA | 3,785,687 | G→C | G75G (GGC→GGG) | kbl ← | glycine C‑acetyltransferase |
| RA | 3,786,467 | T→C | I193V (ATT→GTT) | yibB ← | protein YibB |
| RA | 3,786,991 | T→C | D18G (GAT→GGT) | yibB ← | protein YibB |
| RA | 3,791,182 | A→C | Y292S (TAC→TCC) | waaL → | O‑antigen ligase |
| RA | 3,798,416 | (T)8→7 | coding (61/936 nt) | rfaS ← | LPS core biosynthesis protein RfaS |
| RA | 3,848,051 | T→G | F257C (TTT→TGT) | emrD → | multidrug efflux MFS transporter EmrD |
| RA | 3,852,078 | T→G | T467P (ACG→CCG) | yidK ← | solute:sodium symporter family transporter |
| RA | 3,896,621 | A→G | D147D (GAT→GAC) | bglB ← | 6‑phospho‑beta‑glucosidase BglB |
| RA | 3,898,828 | (T)5→4 | coding (130/1878 nt) | bglF ← | PTS beta‑glucoside transporter subunit IIABC |
| RA | 3,901,121 | A→G | D202D (GAT→GAC) | pstB ← | phosphate ABC transporter ATP‑binding protein PstB |
| RA | 3,931,448 | G→T | L265F (TTG→TTT) | rbsK → | ribokinase |
| RA | 3,934,995 | +C | intergenic (‑308/‑173) | yieP ← / → BW25113_RS19520 | FadR/GntR family transcriptional regulator/16S ribosomal RNA |
| RA | 4,034,572 | T→G | Q74H (CAA→CAC) | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein MobB |
| RA | 4,064,564 | A→G | Y185H (TAT→CAT) | yihS ← | sulfoquinovose isomerase |
| RA | 4,073,163 | A→T | D26V (GAT→GTT) | BW25113_RS20185 → | hypothetical protein |
| RA | 4,084,653 | A→G | G358G (GGT→GGC) | frvB ← | PTS fructose‑like transporter subunit IIBC |
| RA | 4,108,830 | A→G | H143H (CAT→CAC) | rraA ← | ribonuclease E activity regulator RraA |
| RA | 4,117,071 | T→C | F44S (TTC→TCC) | rpmE → | 50S ribosomal protein L31 |
| RA | 4,153,816 | T→C | S84P (TCA→CCA) | btuB → | TonB‑dependent vitamin B12 receptor BtuB |
| RA | 4,180,586 | (A)7→6 | intergenic (+333/+77) | yjaZ → / ← thiH | heat‑shock protein C/2‑iminoacetate synthase ThiH |
| RA | 4,211,170 | (T)8→7 | coding (1246/2187 nt) | espL4 ← | type III secretion system effector EspL4 |
| RA | 4,215,724 | T→G | W657G (TGG→GGG) | metH → | methionine synthase |
| RA | 4,306,692 | A→T | I115N (ATC→AAC) | phnM ← | alpha‑D‑ribose 1‑methylphosphonate 5‑triphosphate diphosphatase |
| RA | 4,350,381 | G→C | G457G (GGC→GGG) | cadC ← | lysine decarboxylation/transport transcriptional activator CadC |
| RA | 4,367,563 | T→C | intergenic (‑24/+65) | blc ← / ← ampC | lipocalin Blc/BlaEC family class C beta‑lactamase |
| RA | 4,385,675 | T→G | F92V (TTT→GTT) | tsaE → | tRNA (adenosine(37)‑N6)‑threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE |
| RA | 4,409,638 | T→C | intergenic (‑196/‑159) | ulaG ← / → ulaA | L‑ascorbate 6‑phosphate lactonase/PTS ascorbate transporter subunit IIC |
| RA | 4,494,539 | T→C | F222S (TTC→TCC) | nanX → | MFS transporter |
| RA | 4,527,151 | T→C | Q87Q (CAA→CAG) | nanS ← | 9‑O‑acetyl‑N‑acetylneuraminic acid deacetylase |
| RA | 4,543,103 | A→G | E129G (GAA→GGA) | uxuB → | fructuronate reductase |
| RA | 4,593,447 | T→C | S52P (TCC→CCC) | yjjQ → | response regulator transcription factor |
| RA | 4,613,222 | C→G | R238P (CGC→CCC) | lplA ← | lipoate‑‑protein ligase LplA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 71434 | 71457 | 24 | 2 [1] | [1] 2 | thiB | thiamine ABC transporter substrate binding subunit |
| * | * | ÷ | NZ_CP009273 | 198214 | 198224 | 11 | 4 [1] | [1] 2 | lpxD | UDP‑3‑O‑(3‑hydroxymyristoyl)glucosamine N‑acyltransferase |
| * | * | ÷ | NZ_CP009273 | 201444 | 201468 | 25 | 5 [1] | [1] 2 | rnhB | ribonuclease HII |
| * | * | ÷ | NZ_CP009273 | 246782 | 246796 | 15 | 2 [1] | [1] 2 | lafU | putative lateral flagellar export/assembly protein LafU |
| * | * | ÷ | NZ_CP009273 | 356931 | 357578 | 648 | 2 [1] | [1] 2 | lacA | lacA |
| * | * | ÷ | NZ_CP009273 | 428506 | 428558 | 53 | 2 [1] | [1] 3 | nrdR | transcriptional regulator NrdR |
| * | * | ÷ | NZ_CP009273 | 463296 | 463326 | 31 | 2 [1] | [1] 2 | cof | HMP‑PP phosphatase |
| * | * | ÷ | NZ_CP009273 | 488156 | 488168 | 13 | 2 [0] | [1] 2 | dnaX | DNA polymerase III subunit gamma/tau |
| * | * | ÷ | NZ_CP009273 | 525883 | 525914 | 32 | 3 [1] | [1] 2 | mnmH | tRNA 2‑selenouridine(34) synthase MnmH |
| * | * | ÷ | NZ_CP009273 | 553091 | 553106 | 16 | 2 [0] | [1] 2 | folD | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD |
| * | * | ÷ | NZ_CP009273 | 600896 | 600980 | 85 | 2 [1] | [1] 3 | [ybdF] | [ybdF] |
| * | * | ÷ | NZ_CP009273 | 622441 | 622455 | 15 | 3 [1] | [1] 2 | entE | (2,3‑dihydroxybenzoyl)adenylate synthase EntE |
| * | * | ÷ | NZ_CP009273 | 650400 | 650483 | 84 | 2 [1] | [1] 3 | dcuC | anaerobic C4‑dicarboxylate transporter DcuC |
| * | * | ÷ | NZ_CP009273 | 703506 | 703577 | 72 | 2 [1] | [0] 2 | glnS/chiP | glutamine‑‑tRNA ligase/chitoporin |
| * | * | ÷ | NZ_CP009273 | 726354 | 726381 | 28 | 2 [1] | [1] 2 | rhsC | rhs element protein RhsC |
| * | * | ÷ | NZ_CP009273 | 748306 | 748325 | 20 | 2 [1] | [1] 2 | ybgD/gltA | fimbrial protein/citrate synthase |
| * | * | ÷ | NZ_CP009273 | 748528 | 748582 | 55 | 2 [1] | [1] 2 | ybgD/gltA | fimbrial protein/citrate synthase |
| * | * | ÷ | NZ_CP009273 | 772196 | 772388 | 193 | 2 [1] | [1] 2 | tolA | cell envelope integrity protein TolA |
| * | * | ÷ | NZ_CP009273 | 787654 | 787672 | 19 | 2 [1] | [1] 3 | galE/modF | UDP‑glucose 4‑epimerase GalE/molybdate ABC transporter ATP‑binding protein ModF |
| * | * | ÷ | NZ_CP009273 | 828256 | 828271 | 16 | 2 [0] | [1] 2 | ybiA | N‑glycosidase YbiA |
| * | * | ÷ | NZ_CP009273 | 880862 | 880934 | 73 | 2 [1] | [1] 2 | ybjI | 5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase |
| * | * | ÷ | NZ_CP009273 | 902716 | 902717 | 2 | 2 [0] | [0] 2 | ybjT | SDR family oxidoreductase |
| * | * | ÷ | NZ_CP009273 | 902983 | 903094 | 112 | 2 [1] | [1] 2 | ybjT | SDR family oxidoreductase |
| * | * | ÷ | NZ_CP009273 | 916834 | 916852 | 19 | 2 [1] | [1] 3 | macB | macrolide ABC transporter ATP‑binding protein/permease MacB |
| * | * | ÷ | NZ_CP009273 | 961196 | 961226 | 31 | 2 [1] | [1] 2 | ycaI | ComEC family protein |
| * | * | ÷ | NZ_CP009273 | 964413 | 964420 | 8 | 3 [1] | [1] 2 | lpxK | tetraacyldisaccharide 4'‑kinase |
| * | * | ÷ | NZ_CP009273 | 964858 | 964873 | 16 | 2 [1] | [1] 2 | ycaQ | winged helix DNA‑binding protein YcaQ |
| * | * | ÷ | NZ_CP009273 | 988941 | 988982 | 42 | 3 [1] | [1] 2 | ssuB | aliphatic sulfonates ABC transporter ATP‑binding protein |
| * | * | ÷ | NZ_CP009273 | 991697 | 991728 | 32 | 3 [1] | [1] 2 | ssuA | aliphatic sulfonate ABC transporter substrate‑binding protein SsuA |
| * | * | ÷ | NZ_CP009273 | 1000080 | 1000086 | 7 | 2 [1] | [1] 2 | ycbF | fimbrial chaperone |
| * | * | ÷ | NZ_CP009273 | 1023286 | 1023308 | 23 | 3 [1] | [0] 3 | yccT/yccU | DUF2057 family protein/CoA‑binding protein |
| * | * | ÷ | NZ_CP009273 | 1061006 | 1061017 | 12 | 2 [1] | [0] 4 | yccE/agp | YccE family protein/bifunctional glucose‑1‑phosphatase/inositol phosphatase |
| * | * | ÷ | NZ_CP009273 | 1070173 | 1070239 | 67 | 3 [1] | [1] 2 | rutR | HTH‑type transcriptional regulator RutR |
| * | * | ÷ | NZ_CP009273 | 1103862 | 1103951 | 90 | 2 [0] | [1] 2 | mdoC | glucans biosynthesis protein MdoC |
| * | * | ÷ | NZ_CP009273 | 1114563 | 1114595 | 33 | 2 [1] | [1] 2 | yceJ/BW25113_RS05515 | cytochrome b/YceO family protein |
| * | * | ÷ | NZ_CP009273 | 1137761 | 1137853 | 93 | 2 [0] | [1] 2 | rne | ribonuclease E |
| * | * | ÷ | NZ_CP009273 | 1137981 | 1137994 | 14 | 2 [0] | [1] 2 | rne | ribonuclease E |
| * | * | ÷ | NZ_CP009273 | 1139321 | 1139360 | 40 | 3 [0] | [1] 2 | rne | ribonuclease E |
| * | * | ÷ | NZ_CP009273 | 1151756 | 1151768 | 13 | 2 [1] | [1] 2 | holB | DNA polymerase III subunit delta' |
| * | * | ÷ | NZ_CP009273 | 1158176 | 1158227 | 52 | 2 [1] | [1] 2 | lpoB | penicillin‑binding protein activator LpoB |
| * | * | ÷ | NZ_CP009273 | 1161553 | 1161570 | 18 | 2 [1] | [1] 3 | ndh | NADH‑quinone dehydrogenase |
| * | * | ÷ | NZ_CP009273 | 1167420 | 1167461 | 42 | 2 [1] | [1] 2 | mfd | transcription‑repair coupling factor |
| * | * | ÷ | NZ_CP009273 | 1168113 | 1168156 | 44 | 2 [1] | [1] 2 | mfd | transcription‑repair coupling factor |
| * | * | ÷ | NZ_CP009273 | 1180374 | 1180412 | 39 | 2 [1] | [1] 2 | potA | spermidine/putrescine ABC transporter ATP‑binding protein PotA |
| * | * | ÷ | NZ_CP009273 | 1207571 | 1207590 | 20 | 2 [0] | [1] 2 | iraM/BW25113_RS25985 | anti‑adapter protein IraM/protein YmgK |
| * | * | ÷ | NZ_CP009273 | 1211123 | 1211145 | 23 | 3 [0] | [1] 2 | bluF/ycgZ | blue light‑responsive regulator BluF/regulatory protein YcgZ |
| * | * | ÷ | NZ_CP009273 | 1215901 | 1215937 | 37 | 2 [1] | [1] 2 | BW25113_RS25990 | autotransporter outer membrane beta‑barrel domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 1223583 | 1223627 | 45 | 2 [1] | [1] 3 | ycgM | fumarylacetoacetate hydrolase family protein |
| * | * | ÷ | NZ_CP009273 | 1230543 | 1230582 | 40 | 4 [1] | [1] 2 | fadR | fatty acid metabolism transcriptional regulator FadR |
| * | * | ÷ | NZ_CP009273 | 1240560 | 1240627 | 68 | 2 [1] | [1] 2 | [BW25113_RS06225] | [BW25113_RS06225] |
| * | * | ÷ | NZ_CP009273 | 1245425 | 1245453 | 29 | 2 [1] | [1] 2 | dhaK | dihydroxyacetone kinase subunit DhaK |
| * | * | ÷ | NZ_CP009273 | 1246718 | 1246730 | 13 | 2 [1] | [1] 3 | dhaR | dihydroxyacetone kinase operon transcriptional regulator DhaR |
| * | * | ÷ | NZ_CP009273 | 1267965 | 1268008 | 44 | 2 [1] | [1] 2 | chaC | glutathione‑specific gamma‑glutamylcyclotransferase |
| * | * | ÷ | NZ_CP009273 | 1273664 | 1273680 | 17 | 2 [1] | [1] 3 | narK | nitrate transporter NarK |
| * | * | ÷ | NZ_CP009273 | 1281009 | 1281040 | 32 | 2 [1] | [1] 2 | narJ | nitrate reductase molybdenum cofactor assembly chaperone |
| * | * | ÷ | NZ_CP009273 | 1294198 | 1294218 | 21 | 2 [1] | [1] 3 | ychE | NAAT family transporter YchE |
| * | * | ÷ | NZ_CP009273 | 1306796 | 1306808 | 13 | 2 [1] | [1] 2 | yciB | septation protein A |
| * | * | ÷ | NZ_CP009273 | 1313869 | 1313869 | 1 | 2 [0] | [0] 2 | trpCF | bifunctional indole‑3‑glycerol‑phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF |
| * | * | ÷ | NZ_CP009273 | 1318350 | 1318418 | 69 | 2 [1] | [1] 3 | [yciV]–[yciO] | [yciV],[yciO] |
| * | * | ÷ | NZ_CP009273 | 1318528 | 1318554 | 27 | 3 [1] | [1] 2 | yciO | L‑threonylcarbamoyladenylate synthase |
| * | * | ÷ | NZ_CP009273 | 1320801 | 1320879 | 79 | 2 [1] | [1] 2 | yciQ | DUF2207 domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 1334148 | 1334218 | 71 | 2 [1] | [1] 2 | pgpB | phosphatidylglycerophosphatase B |
| * | * | ÷ | NZ_CP009273 | 1350604 | 1350621 | 18 | 2 [1] | [0] 2 | sapA | peptide ABC transporter substrate‑binding protein SapA |
| * | * | ÷ | NZ_CP009273 | 1362443 | 1362534 | 92 | 2 [1] | [1] 2 | pspA | phage shock protein PspA |
| * | * | ÷ | NZ_CP009273 | 1373225 | 1373260 | 36 | 2 [0] | [1] 2 | ycjT | kojibiose phosphorylase |
| * | * | ÷ | NZ_CP009273 | 1393444 | 1393491 | 48 | 2 [1] | [0] 3 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr |
| * | * | ÷ | NZ_CP009273 | 1418205 | 1418214 | 10 | 2 [1] | [1] 2 | trkG | Trk system potassium transporter TrkG |
| * | * | ÷ | NZ_CP009273 | 1418815 | 1418824 | 10 | 2 [1] | [1] 3 | trkG | Trk system potassium transporter TrkG |
| * | * | ÷ | NZ_CP009273 | 1450949 | 1450962 | 14 | 3 [1] | [1] 2 | paaK | phenylacetate‑CoA oxygenase/reductase subunit PaaK |
| * | * | ÷ | NZ_CP009273 | 1481000 | 1481025 | 26 | 2 [1] | [1] 2 | hrpA | ATP‑dependent RNA helicase HrpA |
| * | * | ÷ | NZ_CP009273 | 1484563 | 1484568 | 6 | 2 [1] | [0] 2 | gap | type I glyceraldehyde‑3‑phosphate dehydrogenase |
| * | * | ÷ | NZ_CP009273 | 1509220 | 1509267 | 48 | 3 [1] | [1] 2 | ydcV | ABC transporter permease |
| * | * | ÷ | NZ_CP009273 | 1521470 | 1521475 | 6 | 2 [0] | [1] 2 | yncH/BW25113_RS07645 | YncH family protein/RHS repeat protein |
| * | * | ÷ | NZ_CP009273 | 1684717 | 1684747 | 31 | 2 [1] | [1] 2 | ydgA | YdgA family protein |
| * | * | ÷ | NZ_CP009273 | 1686600 | 1686610 | 11 | 5 [0] | [1] 2 | uidC | glucuronide uptake porin UidC |
| * | * | ÷ | NZ_CP009273 | 1687108 | 1687158 | 51 | 2 [1] | [1] 2 | [uidC]–[uidB] | [uidC],[uidB] |
| * | * | ÷ | NZ_CP009273 | 1789497 | 1789526 | 30 | 2 [1] | [1] 3 | [ihfA] | [ihfA] |
| * | * | ÷ | NZ_CP009273 | 1807553 | 1807583 | 31 | 2 [0] | [1] 2 | BW25113_RS09050/cedA | hypothetical protein/cell division activator CedA |
| * | * | ÷ | NZ_CP009273 | 1818576 | 1818610 | 35 | 3 [1] | [0] 2 | cho | excinuclease Cho |
| * | * | ÷ | NZ_CP009273 | 1929080 | 1929100 | 21 | 3 [1] | [1] 2 | [zwf] | [zwf] |
| * | * | ÷ | NZ_CP009273 | 1967650 | 1967659 | 10 | 2 [0] | [1] 3 | cheA | chemotaxis protein CheA |
| * | * | ÷ | NZ_CP009273 | 2010188 | 2010271 | 84 | 2 [1] | [1] 2 | fliI | flagellar protein export ATPase FliI |
| * | * | ÷ | NZ_CP009273 | 2042763 | 2042774 | 12 | 2 [1] | [0] 3 | yeeJ | inverse autotransporter adhesin YeeJ |
| * | * | ÷ | NZ_CP009273 | 2099582 | 2099619 | 38 | 2 [0] | [1] 2 | wzy | O16 family O‑antigen polymerase |
| * | * | ÷ | NZ_CP009273 | 2140745 | 2140845 | 101 | 2 [1] | [1] 2 | alkA | DNA‑3‑methyladenine glycosylase 2 |
| * | * | ÷ | NZ_CP009273 | 2149054 | 2149110 | 57 | 2 [1] | [1] 2 | mdtB | multidrug efflux RND transporter permease subunit MdtB |
| * | * | ÷ | NZ_CP009273 | 2151941 | 2151944 | 4 | 2 [1] | [0] 2 | mdtC | multidrug efflux RND transporter permease subunit MdtC |
| * | * | ÷ | NZ_CP009273 | 2212393 | 2212414 | 22 | 3 [1] | [0] 2 | osmF | glycine betaine ABC transporter substrate‑binding protein OsmF |
| * | * | ÷ | NZ_CP009273 | 2224885 | 2224938 | 54 | 2 [1] | [1] 3 | yohK | CidB/LrgB family autolysis modulator |
| * | * | ÷ | NZ_CP009273 | 2466865 | 2466937 | 73 | 2 [1] | [1] 3 | BW25113_RS26000 | helix‑turn‑helix domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 2563823 | 2563854 | 32 | 2 [1] | [1] 2 | eutE | aldehyde dehydrogenase EutE |
| * | * | ÷ | NZ_CP009273 | 2823971 | 2824035 | 65 | 2 [1] | [1] 2 | gutQ | arabinose‑5‑phosphate isomerase GutQ |
| * | * | ÷ | NZ_CP009273 | 3178644 | 3178673 | 30 | 2 [0] | [1] 2 | ubiK/ygiL | ubiquinone biosynthesis accessory factor UbiK/fimbrial‑like protein |
| * | * | ÷ | NZ_CP009273 | 3492602 | 3492628 | 27 | 3 [1] | [1] 2 | cysG/yhfL | siroheme synthase CysG/YhfL family protein |
| * | * | ÷ | NZ_CP009273 | 3623885 | 3623933 | 49 | 3 [0] | [1] 2 | yhiI | HlyD family efflux transporter periplasmic adaptor subunit |
| * | * | ÷ | NZ_CP009273 | 3661067 | 3661074 | 8 | 2 [0] | [1] 2 | gadA/ccp | glutamate decarboxylase/cytochrome c peroxidase |
| * | * | ÷ | NZ_CP009273 | 4221720 | 4221730 | 11 | 2 [1] | [0] 3 | yjbD/lysC | DUF3811 domain‑containing protein/lysine‑sensitive aspartokinase 3 |
| * | * | ÷ | NZ_CP009273 | 4272450 | 4272458 | 9 | 2 [0] | [1] 3 | espX5 | T3SS effector pentapeptide repeat protein EspX5 |
| * | * | ÷ | NZ_CP009273 | 4294358 | 4294387 | 30 | 2 [1] | [1] 2 | ytcA/yjcS | YtcA family lipoprotein/alkyl sulfatase YjcS |
| * | * | ÷ | NZ_CP009273 | 4303906 | 4303934 | 29 | 2 [1] | [1] 2 | yjdP | protein YjdP |
| * | * | ÷ | NZ_CP009273 | 4587913 | 4587934 | 22 | 2 [1] | [1] 3 | opgB | phosphatidylglycerol‑‑membrane‑oligosaccharide glycerophosphotransferase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 23 (1.790) | 15/170 | 0.1 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | = 1972751 | 1 (0.080) | 22 (1.710) | 16/170 | 0.1 | 95.7% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||