| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,673,785 | T→C | intergenic (+157/‑29) | ydgH → / → ydgI | DUF1471 family protein YdgH/amino acid permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,673,785 | 0 | T | C | 100.0% | 47.3 / NA | 14 | intergenic (+157/‑29) | ydgH/ydgI | DUF1471 family protein YdgH/amino acid permease |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (5/9); total (5/9) | |||||||||||
GCATGCAGACACATCTCTTCGTAAAATCCCGCGCTTCAGTGGCAAACTCCATTTTTATGCGTTTTGCCCTAATATTTATTCTTCTTATCACGTTTTAATCACTGGATATCGATGGAAAAGAAACTGGGACTGAGCGCACTCACCGCGCTGGTATTAAGCTCA > NZ_CP009273/1673703‑1673864 | gcatgcaGACACATCTCTTCGTAAAATCCCGCGCTTCAGTGGCAAACTCCATTTTTATGCGTTTTGCCCTAATATTTATTCTCCTTATCa < 1:49037/90‑1 (MQ=255) atgcaGACACATCTCTTCGTAAAATCCCGCGCTTCAGTGGCAAACTCCATTTTTATGCGTTTTGCCCTAATATTTATTCTCCTTATCACg > 1:86017/1‑90 (MQ=255) atgcaGACACATCTCTTCGTAAAATCCCGCGCTTCAGTGGCAAACTCCATTTTTATGCGTTTTGCCCTAATATTTATTCTCCTTATCACg < 2:175347/90‑1 (MQ=255) aTCTCTTCGTAAAATCCCGCGCTTCAGTGGCAAACTCCATTTTTATGCGTTTTGCCCTAATATTTATTCTCCTTATCACGTTTTAATCAc > 1:274381/1‑90 (MQ=255) gTAAAATCCCGCGCTTCAGTGGCAAACTCCATTTTTATGCGTTTTGCCCTAATATTTAATCTCCTTATCACGTTTTAATCACTGGATATc < 1:224303/90‑1 (MQ=255) aaaTCCCGCGCTTCAGTGGCAAACTCCATTTTTATGCGTTTTGCCCTAATATTTATTCTCCTTATCACGTTTTAATCACTGGATATCGAt > 2:222558/1‑90 (MQ=255) gcgcTTCAGTGGCAAACTCCATTTTTATGCGTTTTGCCCTAATATTTATTCTCCTTATCACGTTTTAATCACTGGATATCGATGGAAAAg < 2:73219/90‑1 (MQ=255) gcgcTTCAGTGGCAAACTCCATTTTTATGCGTTTTGCCCTAATATTTATTCTCCTTATCACGTTTTAATCACTGGATATCGATGGAAAAg < 2:95808/90‑1 (MQ=255) gcTTCAGTGGCAAACTCCATTTTTATGCGTTTTGCCCTAATATTTATTCTCCTTATCACGTTTTAATCACTGGATATCGATGGAAAAGaa < 1:42682/90‑1 (MQ=255) cAGTGGCAAACTCCATTTTTATGCGTTTTGCCCTAATATTTATTCTCCTTATCACGTTTTAATCACTGGATATCGATGGAAAAGAAACTg < 2:154659/90‑1 (MQ=255) tCCATTTTTATGCGTTTTGCCCTAATATTTATTCTCCTTATCACGTTTTAATCACTGGATATCGATGGAAAAGAAACTGGGACTGAgcgc < 1:121265/90‑1 (MQ=255) gCGTTTTGCCCTAATATTTATTCTCCTTATCACGTTTTAATCACTGGATATCGATGGAAAAGAAACTGGGACTGAGCGCACTCACCgcgc > 2:348669/1‑90 (MQ=255) aaTATTTATTCTCCTTATCACGTTTTAATCACTGGATATCGATGGAAAAGAAACTGGGACTGAGCGCACTCACCGCGCTGGTATTAAGCt > 1:18079/1‑90 (MQ=255) tatttattCTCCTTATCACGTTTTAATCACTGGATATCGATGGAAAAGAAACTGGGACTGAGCGCACTCACCGCGCTGGTATTAAGCTCa < 2:86017/90‑1 (MQ=255) | GCATGCAGACACATCTCTTCGTAAAATCCCGCGCTTCAGTGGCAAACTCCATTTTTATGCGTTTTGCCCTAATATTTATTCTTCTTATCACGTTTTAATCACTGGATATCGATGGAAAAGAAACTGGGACTGAGCGCACTCACCGCGCTGGTATTAAGCTCA > NZ_CP009273/1673703‑1673864 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |