breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP009273	349,999	0	T	G	61.5%	2.3 / 12.4	13	V528G (GTG→GGG)	prpE	propionate‑‑CoA ligase
*	NZ_CP009273	3,734,269	0	T	G	58.3%	5.5 / 12.5	13	V402G (GTG→GGG)	avtA	valine‑‑pyruvate transaminase
*	NZ_CP009273	3,776,262	0	T	G	57.9%	13.7 / 16.7	19	T254P (ACC→CCC)	gpsA	NAD(P)H‑dependent glycerol‑3‑phosphate dehydrogenase
*	NZ_CP009273	4,594,161	0	C	T	56.2%	0.1 / 17.0	16	S62F (TCT→TTT)	bglJ	DNA‑binding transcriptional activator BglJ
*	NZ_CP009273	4,464,506	0	A	G	55.6%	5.7 / 13.1	18	E189G (GAA→GGA)	bdcR	TetR/AcrR family transcriptional regulator
*	NZ_CP009273	858,015	0	G	T	54.5%	5.4 / 14.9	11	H16Q (CAC→CAA)	ybiW	glycyl radical protein
*	NZ_CP009273	892,825	0	T	G	54.5%	7.3 / 12.8	11	F96V (TTT→GTT)	potI	putrescine ABC transporter permease PotI
*	NZ_CP009273	2,162,447	0	A	C	54.5%	4.9 / 12.8	11	I85I (ATA→ATC)	yegS	lipid kinase YegS
*	NZ_CP009273	3,170,890	0	A	C	54.5%	6.4 / 12.3	11	V127G (GTG→GGG)	nudF	ADP‑ribose diphosphatase
*	NZ_CP009273	757,993	0	A	C	53.8%	10.3 / 14.8	13	N339T (AAC→ACC)	odhB	2‑oxoglutarate dehydrogenase complex dihydrolipoyllysine‑residue succinyltransferase
*	NZ_CP009273	4,440,600	0	T	G	53.8%	2.3 / 10.8	13	G274G (GGT→GGG)	ytfQ	galactofuranose ABC transporter substrate‑binding protein YtfQ
*	NZ_CP009273	1,816,454	0	A	C	53.3%	4.4 / 14.6	15	G20G (GGT→GGG)	osmE	osmotically‑inducible lipoprotein OsmE
*	NZ_CP009273	3,387,034	0	T	G	52.9%	18.6 / 21.6	17	T862P (ACG→CCG)	yhdP	AsmA2 domain‑containing protein YhdP
*	NZ_CP009273	4,436,765	0	T	G	52.9%	14.9 / 21.2	17	V946G (GTA→GGA)	tamB	autotransporter assembly complex protein TamB