| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,440,600 | 0 | T | G | 53.8% | 2.3 / 10.8 | 13 | G274G (GGT→GGG) | ytfQ | galactofuranose ABC transporter substrate‑binding protein YtfQ |
| Reads supporting (aligned to +/- strand): ref base T (2/4); new base G (7/0); total (9/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.10e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.99e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TCCATTGACGGTGTACCGGACATCTACAAAGCGATGATGGATGGCGAAGCGAACGCCAGTGTTGAACTGACGCCGAATATGGCAGGTCCCGCCTTCGACGCGCTGGAGAAATACAAAAAAGACGGCACCATGCCTGAAAAGCTGACGTTAACCAAATCCACCCTTTACC > NZ_CP009273/4440514‑4440682 | tCCATTGACGGTGTACCGGACATCTACAAAGCGATGATGGATGGCGAAGCGAACGCCAGTGTTGAACTGACGCCGAATATGGCAGGGccc > 1:315272/1‑90 (MQ=255) aTTGACGGTGTACCGGACATCTACAAAGCGATGATGGATGGCGAAGCGAACGCCAGTGTTGAACTGACGCCGAATATGGCAGGGcccccc > 2:347361/1‑90 (MQ=255) gtACCGGACATCTACAAAGCGATGATGGATGGCGAAGCGAACGCCAGTGTTGAACTGACGCCGAATATGGCAGGGCCCGCCCTCGAcgcg > 2:339661/1‑90 (MQ=255) aTCTACAAAGCGATGATGGATGGCGAAGCGAACGCCAGTGTTGAACTGACGCCGAATATGGCAGGTCCCGCCTTCGACGCGCTGGAGaaa < 2:348986/90‑1 (MQ=255) tCTACAAAGCGATGATGGATGGCGAAGCGAACGCCAGTGTTGAACTGACGCCGAATATGGCAGGGCCCGCCCTCGACGCGCTGGGGaaaa > 2:75977/1‑89 (MQ=255) gCGATGATGGATGGCGAAGCGAACGCCAGTGTTGAACTGACGCCGAATATGGCAGGGCCCGCCTTCGACGCGCTGGAGAAATACaaaaaa > 1:29205/1‑90 (MQ=255) atgatgGATGGCGAAGCGAACGCCAGTGTTGAACTGACGCCGAATATGGCAGGTCCCGCCTTCGACGCGCTGGAGAAATACAAAAAAGAc > 1:362113/1‑90 (MQ=255) gcgaagcgaaCGCCAGTGTTGAACTGACGCCGAATATGGCAGGTCCCGCCTTCGACGCGCTGGAGAAAAACAAAAAAAACGGCACCATGc > 2:72311/1‑90 (MQ=255) gaagcgaaCGCCAGTGTTGAACTGACGCCGAATATGGCAGGGCCCGCCTTCGACGCGCTGGGGAAAAAAAAAAAAAAAGGCACCATGccc > 2:305375/1‑89 (MQ=255) gACGCCGAATATGGCAGGGCCCGCCTTCGACGCGCTGGGGAAATACAAAAAAAACGGCACCCTCCCTGAAAAGCTGACGTTTAACAAATc > 2:105138/1‑90 (MQ=255) aCGCCGAATATGGCAGGTCCCGCCTTCGACGCGCTGGAGAAATACAAAAAAGACGGCACCATGCCTGAAAAGCTGACGTTAACCAAATcc < 1:234771/90‑1 (MQ=255) tGGCAGGTCCCGCCTTCGACGCGCTGGAGAAATACAAAAAAGACGGCACCATGCCTGAAAAGCTGACGTTAACCAAATCCACCCTTTAcc < 1:347361/90‑1 (MQ=255) tGGCAGGTCCCGCCTTCGACGCGCTGGAGAAATACAAAAAAGACGGCACCATGCCTGAAAAGCTGACGTTAACCAAATCCACCCTTTAcc < 1:66208/90‑1 (MQ=255) | TCCATTGACGGTGTACCGGACATCTACAAAGCGATGATGGATGGCGAAGCGAACGCCAGTGTTGAACTGACGCCGAATATGGCAGGTCCCGCCTTCGACGCGCTGGAGAAATACAAAAAAGACGGCACCATGCCTGAAAAGCTGACGTTAACCAAATCCACCCTTTACC > NZ_CP009273/4440514‑4440682 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |