| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,170,890 | 0 | A | C | 54.5% | 6.4 / 12.3 | 11 | V127G (GTG→GGG) | nudF | ADP‑ribose diphosphatase |
| Reads supporting (aligned to +/- strand): ref base A (4/1); new base C (0/6); total (4/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.52e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.28e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGTGCCCCCCGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAA > NZ_CP009273/3170809‑3170974 | cTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGTGCCCCCCGGGCTTGCCAGGAAACTTAACACCGGTTTg > 1:162576/1‑90 (MQ=255) tCGTGGCGTCCACTTCGCCTACCATAATTGACGAACGCTCACTGGTGCCCCCCGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGtt < 2:174604/90‑1 (MQ=255) cccccACCATAATTGACGAACGCTCCCTGGTCCCCCCCGGGCTTGCCAGGAAATTTAACCCCGGTTTGGTCCTTTTGACTATCAGTCCCg < 2:15598/88‑1 (MQ=255) gCCCCCCGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATc > 1:203/1‑90 (MQ=255) cGGGCTTGCCAGAAAATTAACCCCCGGTTGGGTCCGTTTACCTACCAGCCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCcac < 2:198608/90‑1 (MQ=255) cGGGCTTGCCAGAAAACTTAACCCCGTTTTGGTCCTTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCcac < 1:321208/90‑1 (MQ=255) cGGGCTTCCCAGAAACCTAAACCCGGTTTTGGTCCTTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCcac < 2:132891/90‑1 (MQ=255) ggCTTCCCAGAAACCTTACCCCCGTTTTGGCCCTTTTGCCTATCAGCCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCacac < 1:122883/90‑1 (MQ=255) tGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTc > 1:132891/1‑90 (MQ=255) ccAGAAAACTTAACCCCGGTTGGGTCCTTTTGACTATCCGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCAc < 1:233810/90‑1 (MQ=255) ttAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCaa > 1:269760/1‑90 (MQ=255) | CTTGCGGTCGTGGCGTCCACTTCGCCCACCATAATTGACGAACGCTCACTGGTGCCCCCCGGGCTTGCCAGGAAACTTAACACCGGTTTGGTCCGTTTGACTATCAGTCCCGCCTCTTCAATCGCTTCGCGACGGGCAACATCTTCCACACTTTCACCCTCTTCAA > NZ_CP009273/3170809‑3170974 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |