mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,736 | A→T | intergenic (+105/‑87) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
| RA | 49,903 | T→A | D27E (GAT→GAA) | folA → | type 3 dihydrofolate reductase |
| RA | 50,280 | T→C | F153S (TTT→TCT) | folA → | type 3 dihydrofolate reductase |
| RA | 108,362 | A→G | F242S (TTC→TCC) | zapD ← | cell division protein ZapD |
| RA | 115,488 | T→C | F90S (TTC→TCC) | ampD → | 1,6‑anhydro‑N‑acetylmuramyl‑L‑alanine amidase AmpD |
| RA | 115,628 | A→C | T137P (ACG→CCG) | ampD → | 1,6‑anhydro‑N‑acetylmuramyl‑L‑alanine amidase AmpD |
| RA | 139,618 | A→G | E118G (GAA→GGA) | yadG → | ABC transporter ATP‑binding protein |
| RA | 221,335 | T→C | noncoding (1078/1542 nt) | BW25113_RS01010 → | 16S ribosomal RNA |
| RA | 231,042 | A→C | G76G (GGT→GGG) | gloB ← | hydroxyacylglutathione hydrolase |
| RA | 264,689 | (A)5→4 | intergenic (‑18/+311) | ykfA ← / ← perR | GTPase family protein/LysR substrate‑binding domain‑containing protein |
| RA | 297,509 | G→C | G30G (GGC→GGG) | paoB ← | aldehyde oxidoreductase FAD‑binding subunit PaoB |
| RA | 340,444 | (A)5→4 | coding (558/816 nt) | BW25113_RS01680 → | hypothetical protein |
| RA | 354,025 | T→C | E126G (GAA→GGA) | cynR ← | transcriptional regulator CynR |
| RA | 386,045 | T→C | pseudogene (339/1527 nt) | BW25113_RS01915 → | outer membrane autotransporter barrel domain‑containing protein |
| RA | 444,519 | G→A | R527C (CGT→TGT) | cyoB ← | cytochrome o ubiquinol oxidase subunit I |
| RA | 465,464 | T→C | S380P (TCG→CCG) | mdlA → | SmdA family multidrug ABC transporter permease/ATP‑binding protein |
| RA | 508,601 | (C)6→7 | coding (570/1293 nt) | ybaT → | APC family permease |
| RA | 539,975 | A→G | D258D (GAT→GAC) | allC ← | allantoate deiminase |
| RA | 554,427 | A→G | intergenic (+217/‑3) | fimA → / → fimC | type 1 fimbrial major subunit FimA/type 1 fimbria chaperone FimC |
| RA | 568,752 | A→G | G71G (GGA→GGG) | ybcO → | DUF1364 domain‑containing protein |
| RA | 579,943 | (T)8→7 | intergenic (+57/+193) | appY → / ← ompT | DNA‑binding transcriptional activator AppY/omptin family outer membrane protease OmpT |
| RA | 601,986 | A→G | F285S (TTC→TCC) | ybdK ← | YbdK family carboxylate‑amine ligase |
| RA | 661,892 | A→C | G594G (GGT→GGG) | mrdA ← | peptidoglycan DD‑transpeptidase MrdA |
| RA | 674,442 | T→G | T141P (ACT→CCT) | ybeT ← | tetratricopeptide repeat protein |
| RA | 950,036 | (T)5→4 | intergenic (‑114/+292) | focA ← / ← ycaO | formate transporter FocA/30S ribosomal protein S12 methylthiotransferase accessory factor YcaO |
| RA | 951,809 | T→G | T94P (ACC→CCC) | ycaO ← | 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO |
| RA | 979,260 | T→C | I52T (ATC→ACC) | gloC → | hydroxyacylglutathione hydrolase GloC |
| RA | 1,021,663 | (A)5→4 | coding (1737/2055 nt) | helD → | DNA helicase IV |
| RA | 1,060,988 | (A)6→5 | intergenic (+240/‑53) | yccE → / → agp | YccE family protein/bifunctional glucose‑1‑phosphatase/inositol phosphatase |
| RA | 1,062,210 | T→C | G390G (GGT→GGC) | agp → | bifunctional glucose‑1‑phosphatase/inositol phosphatase |
| RA | 1,065,426 | T→G | T129P (ACC→CCC) | rutF ← | pyrimidine utilization flavin reductase protein F |
| RA | 1,076,727 | (T)5→4 | intergenic (+458/‑85) | putP → / → BW25113_RS05295 | sodium/proline symporter PutP/FTR1 family protein |
| RA | 1,110,952 | T→C | intergenic (‑6/+166) | mdtG ← / ← lpxL | multidrug efflux MFS transporter MdtG/kdo(2)‑lipid IV(A) lauroyltransferase |
| RA | 1,240,670 | Δ1 bp | coding (55/441 nt) | BW25113_RS06225 → | hypothetical protein |
| RA | 1,259,173 | A→G | T2A (ACC→GCC) | hemA → | glutamyl‑tRNA reductase |
| RA | 1,276,251 | Δ1 bp | coding (932/3744 nt) | narG → | nitrate reductase subunit alpha |
| RA | 1,300,524 | Δ1 bp | coding (504/1005 nt) | oppF → | murein tripeptide/oligopeptide ABC transporter ATP‑binding protein OppF |
| RA | 1,320,565 | G→A | Q521Q (CAG→CAA) | yciQ → | DUF2207 domain‑containing protein |
| RA | 1,325,886 | T→C | G194G (GGT→GGC) | topA → | type I DNA topoisomerase |
| RA | 1,331,016 | A→G | Y310C (TAT→TGT) | acnA → | aconitate hydratase AcnA |
| RA | 1,392,826 | T→C | Q18Q (CAA→CAG) | uspE ← | universal stress protein UspE |
| RA | 1,394,163 | G→A | L111L (CTG→TTG) | ogt ← | methylated‑DNA‑‑[protein]‑cysteine S‑methyltransferase |
| RA | 1,402,000 | A→G | I18T (ATC→ACC) | dgcM ← | diguanylate cyclase DgcM |
| RA | 1,417,788 | (C)6→7 | coding (69/120 nt) | BW25113_RS26130 ← | hypothetical protein |
| RA | 1,423,602 | T→C | R99R (CGT→CGC) | stfR → | prophage tail fiber N‑terminal domain‑containing protein |
| RA | 1,431,536 | T→C | E1169G (GAA→GGA) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 1,434,377 | A→G | F222S (TTC→TCC) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 1,454,774 | A→G | D16G (GAT→GGT) | paaI → | hydroxyphenylacetyl‑CoA thioesterase PaaI |
| RA | 1,499,566 | A→G | S258P (TCC→CCC) | ydcO ← | BenE family transporter YdcO |
| RA | 1,502,076 | A→G | N347D (AAC→GAC) | rlhA → | 23S rRNA 5‑hydroxycytidine C2501 synthase |
| RA | 1,503,965 | T→C | D67D (GAT→GAC) | hicB → | type II toxin‑antitoxin system antitoxin HicB |
| RA | 1,524,815 | T→C | intergenic (‑54/‑28) | BW25113_RS25600 ← / → BW25113_RS07655 | protein YncO/ISAs1 family transposase |
| RA | 1,531,275 | G→A | L98L (CTG→TTG) | narW ← | nitrate reductase molybdenum cofactor assembly chaperone |
| RA | 1,547,935 | A→G | V54A (GTA→GCA) | adhP ← | alcohol dehydrogenase AdhP |
| RA | 1,558,439 | A→G | Y518H (TAT→CAT) | dosP ← | oxygen‑sensing cyclic‑di‑GMP phosphodiesterase |
| RA | 1,573,157 | A→T | I148N (ATC→AAC) | yddA ← | ABC transporter ATP‑binding protein/permease |
| RA | 1,575,825 | A→T | D319E (GAT→GAA) | ydeN ← | sulfatase |
| RA | 1,576,388 | A→G | S132P (TCC→CCC) | ydeN ← | sulfatase |
| RA | 1,579,109 | A→C | G545G (GGT→GGG) | ydeP ← | acid resistance putative oxidoreductase YdeP |
| RA | 1,613,753 | (A)6→5 | coding (377/435 nt) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| RA | 1,632,437 | (T)7→6 | intergenic (‑71/+8) | BW25113_RS08135 ← / ← BW25113_RS25620 | hypothetical protein/hypothetical protein |
| RA | 1,634,151 | Δ1 bp | coding (164/534 nt) | rrrQ ← | lysozyme |
| RA | 1,649,476 | A→G | intergenic (‑78/+128) | rspA ← / ← ynfA | starvation‑sensing protein RspA/YnfA family protein |
| RA | 1,659,576 | T→C | F14S (TTC→TCC) | clcB → | voltage‑gated ClC‑type chloride channel ClcB |
| RA | 1,671,899 | T→G | T88P (ACG→CCG) | pntA ← | Re/Si‑specific NAD(P)(+) transhydrogenase subunit alpha |
| RA | 1,673,542 | A→G | K287E (AAG→GAG) | ydgH → | DUF1471 family protein YdgH |
| RA | 1,717,498 | G→C | G374A (GGC→GCC) | ydhK → | FUSC family protein |
| RA | 1,782,276 | T→G | V192G (GTG→GGG) | ppsR → | posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR |
| RA | 1,803,201 | A→G | V97A (GTC→GCC) | yniB ← | YniB family protein |
| RA | 1,807,028 | T→C | E121G (GAA→GGA) | BW25113_RS09050 ← | hypothetical protein |
| RA | 1,812,807 | (C)7→8 | intergenic (‑50/+55) | celF ← / ← chbR | 6‑phospho‑beta‑glucosidase/transcriptional regulator ChbR |
| RA | 1,838,813 | T→C | I106V (ATT→GTT) | ynjI ← | DUF1266 domain‑containing protein |
| RA | 1,854,126 | T→C | M121V (ATG→GTG) | ydjK ← | MFS transporter |
| RA | 1,877,816 | T→C | pseudogene (408/1482 nt) | yeaV → | BCCT family transporter YeaV |
| RA | 1,897,230 | A→G | D309G (GAT→GGT) | manX → | PTS mannose transporter subunit IIAB |
| RA | 1,903,061 | A→T | intergenic (‑38/‑121) | mgrB ← / → yobH | PhoP/PhoQ regulator MgrB/YobH family protein |
| RA | 1,934,547 | T→C | intergenic (‑97/+23) | lpxM ← / ← mepM | lauroyl‑Kdo(2)‑lipid IV(A) myristoyltransferase/murein DD‑endopeptidase MepM |
| RA | 1,965,782 | T→G | E389D (GAA→GAC) | tar ← | methyl‑accepting chemotaxis protein II |
| RA | 1,980,420 | A→G | G5G (GGA→GGG) | ftnB → | non‑heme ferritin‑like protein |
| RA | 2,003,480 | T→C | F60S (TTC→TCC) | yedK → | SOS response‑associated peptidase |
| RA | 2,038,183 | (T)5→4 | intergenic (+78/‑236) | BW25113_RS10330 → / → yeeJ | tRNA‑Asn/inverse autotransporter adhesin YeeJ |
| RA | 2,057,664 | T→C | G95G (GGA→GGG) | cobT ← | nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase |
| RA | 2,064,259 | T→G | V93G (GTG→GGG) | BW25113_RS10440 → | GTPase family protein |
| RA | 2,102,646 | T→C | G140G (GGA→GGG) | wzx ← | O16 family O‑antigen flippase |
| RA | 2,131,004 | A→G | intergenic (‑280/‑379) | wza ← / → yegH | polysaccharide export protein Wza/TerC family protein |
| RA | 2,174,381 | T→G | C270G (TGC→GGC) | yegU → | ADP‑ribosylglycohydrolase family protein |
| RA | 2,176,805 | T→G | D109A (GAC→GCC) | yegX ← | glycoside hydrolase family 25 protein |
| RA | 2,202,171 | G→C | W242C (TGG→TGC) | yehP → | VWA domain‑containing protein |
| RA | 2,220,044 | A→G | S236P (TCG→CCG) | yohF ← | SDR family oxidoreductase |
| RA | 2,229,956 | A→G | K405E (AAA→GAA) | preA → | NAD‑dependent dihydropyrimidine dehydrogenase subunit PreA |
| RA | 2,283,874 | Δ1 bp | intergenic (‑350/‑105) | BW25113_RS11435 ← / → narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP |
| RA | 2,284,519 | T→C | S181P (TCC→CCC) | narP → | nitrate/nitrite response regulator protein NarP |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| RA | 2,410,868 | A→T | G103G (GGA→GGT) | yfcC → | putative basic amino acid antiporter YfcC |
| RA | 2,425,778 | T→C | E215G (GAA→GGA) | folC ← | bifunctional tetrahydrofolate synthase/dihydrofolate synthase |
| RA | 2,439,101 | T→C | K255E (AAG→GAG) | mepA ← | penicillin‑insensitive murein endopeptidase |
| RA | 2,505,777 | T→C | I137V (ATC→GTC) | mntH ← | Nramp family divalent metal transporter |
| RA | 2,526,050 | A→G | T95A (ACC→GCC) | cysK → | cysteine synthase A |
| RA | 2,536,106 | T→C | E261G (GAA→GGA) | cysP ← | thiosulfate/sulfate ABC transporter substrate‑binding protein CysP |
| RA | 2,554,121 | A→C | N169T (AAC→ACC) | BW25113_RS12740 → | hypothetical protein |
| RA | 2,661,508 | T→G | T250P (ACC→CCC) | hcaR ← | DNA‑binding transcriptional regulator HcaR |
| RA | 2,678,723 | A→C | G48G (GGT→GGG) | glyA ← | serine hydroxymethyltransferase |
| RA | 2,726,562 | (T)5→4 | coding (971/2574 nt) | clpB ← | ATP‑dependent chaperone ClpB |
| RA | 2,739,096 | T→C | E61G (GAA→GGA) | rimM ← | ribosome maturation factor RimM |
| RA | 2,751,237 | A→G | V241V (GTT→GTC) | BW25113_RS13685 ← | hypothetical protein |
| RA | 2,753,169 | T→C | S276P (TCA→CCA) | yfjI → | YfjI family protein |
| RA | 2,778,934 | (T)6→5 | intergenic (‑564/+187) | BW25113_RS25705 ← / ← BW25113_RS13825 | DUF5507 domain‑containing protein/tRNA‑Ile |
| RA | 2,801,112 | A→C | T208P (ACC→CCC) | proX → | glycine betaine/L‑proline ABC transporter substrate‑binding protein ProX |
| RA | 2,814,267 | A→G | A368A (GCT→GCC) | alaS ← | alanine‑‑tRNA ligase |
| RA | 2,818,451 | T→C | E162G (GAA→GGA) | mltB ← | lytic murein transglycosylase B |
| RA | 2,819,095 | T→C | intergenic (‑160/‑96) | mltB ← / → srlA | lytic murein transglycosylase B/PTS glucitol/sorbitol transporter subunit IIC |
| RA | 2,849,315 | A→C | Y540S (TAC→TCC) | flhA → | formate hydrogenlyase transcriptional activator FlhA |
| RA | 2,849,816 | T→C | E117G (GAA→GGA) | ygbA ← | nitrous oxide‑stimulated promoter family protein |
| RA | 2,859,998 | T→C | I305V (ATT→GTT) | rpoS ← | RNA polymerase sigma factor RpoS |
| RA | 2,882,413 | A→C | V349G (GTT→GGT) | cysI ← | assimilatory sulfite reductase (NADPH) hemoprotein subunit |
| RA | 2,888,711 | A→G | V143A (GTC→GCC) | ygcQ ← | electron transfer flavoprotein subunit alpha/FixB family protein |
| RA | 2,982,555 | T→C | F232S (TTC→TCC) | yqeI → | transcriptional regulator |
| RA | 3,011,010 | A→G | E531G (GAA→GGA) | ygfK → | putative selenate reductase subunit YgfK |
| RA | 3,098,336 | Δ1 bp | coding (545/1080 nt) | mltC → | membrane‑bound lytic murein transglycosylase MltC |
| RA | 3,103,871 | (A)7→6 | intergenic (+71/+78) | BW25113_RS15410 → / ← yghD | tRNA‑Phe/GspM family type II secretion system protein YghD |
| RA | 3,273,721 | A→G | E49G (GAA→GGA) | agaV → | PTS N‑acetylgalactosamine transporter subunit IIB |
| RA | 3,458,386 | A→G | E369G (GAA→GGA) | gspL → | type II secretion system protein GspL |
| RA | 3,475,701 | T→C | S352P (TCG→CCG) | yheS → | ABC transporter ATP‑binding protein |
| RA | 3,535,339 | T→C | F525S (TTC→TCC) | feoB → | Fe(2+) transporter permease subunit FeoB |
| RA | 3,576,634 | A→G | R79R (CGA→CGG) | BW25113_RS17825 → | YrhA family protein |
| RA | 3,579,168 | T→C | E339G (GAA→GGA) | ggt ← | gamma‑glutamyltransferase |
| RA | 3,717,969 | T→C | E237G (GAA→GGA) | glyQ ← | glycine‑‑tRNA ligase subunit alpha |
| RA | 3,786,467 | T→C | I193V (ATT→GTT) | yibB ← | protein YibB |
| RA | 3,786,991 | T→C | D18G (GAT→GGT) | yibB ← | protein YibB |
| RA | 3,791,182 | A→C | Y292S (TAC→TCC) | waaL → | O‑antigen ligase |
| RA | 3,798,416 | (T)8→7 | coding (61/936 nt) | rfaS ← | LPS core biosynthesis protein RfaS |
| RA | 3,848,051 | T→G | F257C (TTT→TGT) | emrD → | multidrug efflux MFS transporter EmrD |
| RA | 3,852,078 | T→G | T467P (ACG→CCG) | yidK ← | solute:sodium symporter family transporter |
| RA | 3,896,621 | A→G | D147D (GAT→GAC) | bglB ← | 6‑phospho‑beta‑glucosidase BglB |
| RA | 3,898,828 | (T)5→4 | coding (130/1878 nt) | bglF ← | PTS beta‑glucoside transporter subunit IIABC |
| RA | 4,034,572 | T→G | Q74H (CAA→CAC) | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein MobB |
| RA | 4,073,163 | A→T | D26V (GAT→GTT) | BW25113_RS20185 → | hypothetical protein |
| RA | 4,084,653 | A→G | G358G (GGT→GGC) | frvB ← | PTS fructose‑like transporter subunit IIBC |
| RA | 4,117,071 | T→C | F44S (TTC→TCC) | rpmE → | 50S ribosomal protein L31 |
| RA | 4,153,816 | T→C | S84P (TCA→CCA) | btuB → | TonB‑dependent vitamin B12 receptor BtuB |
| RA | 4,180,586 | (A)7→6 | intergenic (+333/+77) | yjaZ → / ← thiH | heat‑shock protein C/2‑iminoacetate synthase ThiH |
| RA | 4,211,170 | (T)8→7 | coding (1246/2187 nt) | espL4 ← | type III secretion system effector EspL4 |
| RA | 4,215,724 | T→G | W657G (TGG→GGG) | metH → | methionine synthase |
| RA | 4,306,692 | A→T | I115N (ATC→AAC) | phnM ← | alpha‑D‑ribose 1‑methylphosphonate 5‑triphosphate diphosphatase |
| RA | 4,367,563 | T→C | intergenic (‑24/+65) | blc ← / ← ampC | lipocalin Blc/BlaEC family class C beta‑lactamase |
| RA | 4,494,539 | T→C | F222S (TTC→TCC) | nanX → | MFS transporter |
| RA | 4,527,151 | T→C | Q87Q (CAA→CAG) | nanS ← | 9‑O‑acetyl‑N‑acetylneuraminic acid deacetylase |
| RA | 4,543,103 | A→G | E129G (GAA→GGA) | uxuB → | fructuronate reductase |
| RA | 4,593,447 | T→C | S52P (TCC→CCC) | yjjQ → | response regulator transcription factor |
| RA | 4,613,222 | C→G | R238P (CGC→CCC) | lplA ← | lipoate‑‑protein ligase LplA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 279522 | 279599 | 78 | 2 [1] | [1] 2 | yagF | xylonate dehydratase YagF |
| * | * | ÷ | NZ_CP009273 | 356951 | 357569 | 619 | 2 [1] | [1] 2 | [lacA] | [lacA] |
| * | * | ÷ | NZ_CP009273 | 428545 | 428562 | 18 | 2 [1] | [1] 2 | nrdR | transcriptional regulator NrdR |
| * | * | ÷ | NZ_CP009273 | 463322 | 463357 | 36 | 2 [1] | [1] 2 | cof | HMP‑PP phosphatase |
| * | * | ÷ | NZ_CP009273 | 510218 | 510229 | 12 | 4 [0] | [1] 2 | ybbJ | NfeD family protein |
| * | * | ÷ | NZ_CP009273 | 510320 | 510325 | 6 | 2 [1] | [1] 2 | qmcA | SPFH/Band 7/PHB domain protein |
| * | * | ÷ | NZ_CP009273 | 531703 | 531707 | 5 | 2 [0] | [0] 2 | hyi | hydroxypyruvate isomerase |
| * | * | ÷ | NZ_CP009273 | 546184 | 546196 | 13 | 2 [1] | [1] 2 | ybcF | carbamate kinase |
| * | * | ÷ | NZ_CP009273 | 616996 | 617018 | 23 | 2 [1] | [1] 2 | fepD | Fe(3+)‑siderophore ABC transporter permease |
| * | * | ÷ | NZ_CP009273 | 703091 | 703171 | 81 | 2 [1] | [1] 2 | glnS | glutamine‑‑tRNA ligase |
| * | * | ÷ | NZ_CP009273 | 712095 | 712153 | 59 | 2 [1] | [1] 2 | BW25113_RS03565/BW25113_RS03570 | DUF2625 domain‑containing protein/winged helix‑turn‑helix domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 716337 | 716439 | 103 | 2 [0] | [1] 3 | BW25113_RS26090/kdpE | leader peptide SpeFL/two‑component system response regulator KdpE |
| * | * | ÷ | NZ_CP009273 | 719342 | 719386 | 45 | 2 [1] | [1] 3 | kdpD | two‑component system sensor histidine kinase KdpD |
| * | * | ÷ | NZ_CP009273 | 763041 | 763089 | 49 | 2 [1] | [1] 2 | mngA | PTS 2‑O‑a‑mannosyl‑D‑glycerate transporter subunit IIABC |
| * | * | ÷ | NZ_CP009273 | 764355 | 764403 | 49 | 2 [1] | [0] 2 | mngB | mannosylglycerate hydrolase |
| * | * | ÷ | NZ_CP009273 | 766309 | 766392 | 84 | 2 [1] | [1] 2 | mngB/cydA | mannosylglycerate hydrolase/cytochrome ubiquinol oxidase subunit I |
| * | * | ÷ | NZ_CP009273 | 772496 | 772517 | 22 | 2 [0] | [1] 2 | tolA | cell envelope integrity protein TolA |
| * | * | ÷ | NZ_CP009273 | 779847 | 779876 | 30 | 3 [1] | [1] 2 | zitB | CDF family zinc transporter ZitB |
| * | * | ÷ | NZ_CP009273 | 804746 | 804763 | 18 | 2 [1] | [1] 3 | bioA/bioB | adenosylmethionine‑‑8‑amino‑7‑oxononanoate transaminase/biotin synthase BioB |
| * | * | ÷ | NZ_CP009273 | 808696 | 808702 | 7 | 2 [1] | [1] 2 | bioD/uvrB | dethiobiotin synthase/excinuclease ABC subunit UvrB |
| * | * | ÷ | NZ_CP009273 | 828565 | 828622 | 58 | 2 [1] | [1] 2 | dinG | ATP‑dependent DNA helicase DinG |
| * | * | ÷ | NZ_CP009273 | 843217 | 843225 | 9 | 5 [1] | [1] 2 | glnH | glutamine ABC transporter substrate‑binding protein GlnH |
| * | * | ÷ | NZ_CP009273 | 861492 | 861538 | 47 | 3 [1] | [1] 2 | moeA | molybdopterin molybdotransferase MoeA |
| * | * | ÷ | NZ_CP009273 | 862476 | 862483 | 8 | 3 [1] | [1] 2 | iaaA | beta‑aspartyl‑peptidase |
| * | * | ÷ | NZ_CP009273 | 897880 | 897892 | 13 | 3 [1] | [1] 2 | artJ | arginine ABC transporter substrate‑binding protein |
| * | * | ÷ | NZ_CP009273 | 913363 | 913390 | 28 | 2 [1] | [1] 3 | ybjD | ATP‑dependent endonuclease |
| * | * | ÷ | NZ_CP009273 | 916728 | 916766 | 39 | 2 [1] | [1] 2 | macB | macrolide ABC transporter ATP‑binding protein/permease MacB |
| * | * | ÷ | NZ_CP009273 | 927701 | 927719 | 19 | 2 [0] | [1] 4 | trxB/lrp | thioredoxin‑disulfide reductase/leucine‑responsive transcriptional regulator Lrp |
| * | * | ÷ | NZ_CP009273 | 950053 | 950075 | 23 | 3 [1] | [1] 2 | focA/ycaO | formate transporter FocA/30S ribosomal protein S12 methylthiotransferase accessory factor YcaO |
| * | * | ÷ | NZ_CP009273 | 950240 | 950285 | 46 | 2 [1] | [1] 2 | focA/ycaO | formate transporter FocA/30S ribosomal protein S12 methylthiotransferase accessory factor YcaO |
| * | * | ÷ | NZ_CP009273 | 971747 | 971771 | 25 | 2 [1] | [1] 2 | mukE | chromosome partition protein MukE |
| * | * | ÷ | NZ_CP009273 | 990237 | 990291 | 55 | 2 [1] | [1] 2 | [ssuC] | [ssuC] |
| * | * | ÷ | NZ_CP009273 | 1010950 | 1011000 | 51 | 2 [1] | [1] 2 | pqiC/rmf | membrane integrity‑associated transporter subunit PqiC/ribosome modulation factor |
| * | * | ÷ | NZ_CP009273 | 1046819 | 1046863 | 45 | 2 [1] | [1] 2 | cspH/cspG | cold shock‑like protein CspH/cold shock protein CspG |
| * | * | ÷ | NZ_CP009273 | 1066822 | 1066830 | 9 | 2 [0] | [1] 2 | rutD | pyrimidine utilization protein D |
| * | * | ÷ | NZ_CP009273 | 1071901 | 1071937 | 37 | 3 [1] | [1] 2 | putA | trifunctional transcriptional regulator/proline dehydrogenase/L‑glutamate gamma‑semialdehyde dehydrogenase |
| * | * | ÷ | NZ_CP009273 | 1085152 | 1085182 | 31 | 3 [1] | [1] 2 | pgaB | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine N‑deacetylase PgaB |
| * | * | ÷ | NZ_CP009273 | 1086794 | 1086823 | 30 | 3 [1] | [1] 2 | pgaA | poly‑beta‑1,6 N‑acetyl‑D‑glucosamine export porin PgaA |
| * | * | ÷ | NZ_CP009273 | 1101112 | 1101113 | 2 | 2 [0] | [0] 2 | ymdA | hypothetical protein |
| * | * | ÷ | NZ_CP009273 | 1107275 | 1107307 | 33 | 2 [0] | [1] 2 | mdoH | glucans biosynthesis glucosyltransferase MdoH |
| * | * | ÷ | NZ_CP009273 | 1118153 | 1118243 | 91 | 2 [1] | [1] 2 | [yceB] | [yceB] |
| * | * | ÷ | NZ_CP009273 | 1121824 | 1121830 | 7 | 2 [1] | [0] 2 | yceH | YceH family protein |
| * | * | ÷ | NZ_CP009273 | 1122286 | 1122370 | 85 | 2 [1] | [1] 2 | yceM | Gfo/Idh/MocA family oxidoreductase |
| * | * | ÷ | NZ_CP009273 | 1124020 | 1124034 | 15 | 2 [1] | [1] 2 | murJ | murein biosynthesis integral membrane protein MurJ |
| * | * | ÷ | NZ_CP009273 | 1145634 | 1145680 | 47 | 2 [1] | [1] 2 | fabD | ACP S‑malonyltransferase |
| * | * | ÷ | NZ_CP009273 | 1152701 | 1152726 | 26 | 2 [1] | [1] 2 | ycfH | metal‑dependent hydrolase |
| * | * | ÷ | NZ_CP009273 | 1158155 | 1158236 | 82 | 2 [1] | [1] 2 | lpoB | penicillin‑binding protein activator LpoB |
| * | * | ÷ | NZ_CP009273 | 1159743 | 1159779 | 37 | 2 [1] | [0] 2 | nagZ | beta‑N‑acetylhexosaminidase |
| * | * | ÷ | NZ_CP009273 | 1165713 | 1165745 | 33 | 2 [1] | [0] 3 | ldtC | L,D‑transpeptidase LdtC |
| * | * | ÷ | NZ_CP009273 | 1167420 | 1167425 | 6 | 2 [0] | [0] 2 | mfd | transcription‑repair coupling factor |
| * | * | ÷ | NZ_CP009273 | 1172668 | 1172701 | 34 | 2 [1] | [1] 2 | lolD | lipoprotein‑releasing ABC transporter ATP‑binding protein LolD |
| * | * | ÷ | NZ_CP009273 | 1176269 | 1176276 | 8 | 2 [0] | [1] 2 | ycfZ | TPM domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 1211984 | 1212158 | 175 | 3 [1] | [1] 2 | [ariR] | [ariR] |
| * | * | ÷ | NZ_CP009273 | 1225985 | 1226010 | 26 | 2 [1] | [1] 3 | hlyE/umuD | hemolysin HlyE/translesion error‑prone DNA polymerase V autoproteolytic subunit |
| * | * | ÷ | NZ_CP009273 | 1236310 | 1236339 | 30 | 2 [1] | [1] 2 | cvrA | potassium/proton antiporter |
| * | * | ÷ | NZ_CP009273 | 1239685 | 1239722 | 38 | 2 [1] | [1] 2 | ycgR | flagellar brake protein |
| * | * | ÷ | NZ_CP009273 | 1256076 | 1256078 | 3 | 3 [0] | [0] 3 | dauA | C4‑dicarboxylic acid transporter DauA |
| * | * | ÷ | NZ_CP009273 | 1262930 | 1262968 | 39 | 7 [1] | [1] 2 | sirB1 | invasion regulator SirB1 |
| * | * | ÷ | NZ_CP009273 | 1267316 | 1267361 | 46 | 2 [1] | [0] 2 | chaA/chaB | sodium‑potassium/proton antiporter ChaA/putative cation transport regulator ChaB |
| * | * | ÷ | NZ_CP009273 | 1284909 | 1284974 | 66 | 2 [1] | [1] 2 | rssA | patatin‑like phospholipase RssA |
| * | * | ÷ | NZ_CP009273 | 1302590 | 1302644 | 55 | 2 [1] | [1] 2 | cls | cardiolipin synthase |
| * | * | ÷ | NZ_CP009273 | 1314452 | 1314480 | 29 | 2 [1] | [1] 2 | trpD | bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD |
| * | * | ÷ | NZ_CP009273 | 1316332 | 1316364 | 33 | 2 [0] | [1] 2 | trpE | anthranilate synthase component I |
| * | * | ÷ | NZ_CP009273 | 1319047 | 1319114 | 68 | 3 [1] | [1] 2 | yciQ | DUF2207 domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 1319249 | 1319277 | 29 | 2 [0] | [1] 2 | yciQ | DUF2207 domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 1324803 | 1324819 | 17 | 3 [0] | [0] 2 | yciN | YciN family protein |
| * | * | ÷ | NZ_CP009273 | 1327585 | 1327646 | 62 | 2 [1] | [1] 3 | topA | type I DNA topoisomerase |
| * | * | ÷ | NZ_CP009273 | 1342848 | 1342857 | 10 | 2 [0] | [0] 2 | rnb | exoribonuclease II |
| * | * | ÷ | NZ_CP009273 | 1344920 | 1344927 | 8 | 2 [1] | [0] 2 | fabI | enoyl‑ACP reductase FabI |
| * | * | ÷ | NZ_CP009273 | 1360228 | 1360238 | 11 | 3 [0] | [1] 2 | puuE | 4‑aminobutyrate transaminase |
| * | * | ÷ | NZ_CP009273 | 1362545 | 1362581 | 37 | 2 [1] | [0] 2 | pspA | phage shock protein PspA |
| * | * | ÷ | NZ_CP009273 | 1372900 | 1372963 | 64 | 2 [1] | [0] 2 | ycjT | kojibiose phosphorylase |
| * | * | ÷ | NZ_CP009273 | 1387250 | 1387322 | 73 | 2 [1] | [1] 3 | pgrR/mppA | DNA‑binding transcriptional regulator PgrR/murein tripeptide ABC transporter substrate‑binding protein MppA |
| * | * | ÷ | NZ_CP009273 | 1424195 | 1424249 | 55 | 2 [1] | [0] 2 | stfR | prophage tail fiber N‑terminal domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 1427985–1428244 | 1428284 | 41–300 | 2 [1] | [1] 2 | [ydfK] | [ydfK] |
| * | * | ÷ | NZ_CP009273 | 1431601 | 1431608 | 8 | 4 [0] | [0] 2 | nifJ | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| * | * | ÷ | NZ_CP009273 | 1437540 | 1437566 | 27 | 2 [1] | [1] 2 | ydbH | YdbH family protein |
| * | * | ÷ | NZ_CP009273 | 1485096 | 1485165 | 70 | 2 [1] | [1] 2 | [cybB] | [cybB] |
| * | * | ÷ | NZ_CP009273 | 1538575 | 1538591 | 17 | 3 [1] | [1] 2 | narU/BW25113_RS07710 | nitrate/nitrite transporter NarU/leucine‑rich repeat domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 1627556 | 1627848–1627566 | 11–293 | 2 [1] | [1] 3 | [ydfK] | [ydfK] |
| * | * | ÷ | NZ_CP009273 | 1663696 | 1663788 | 93 | 2 [1] | [1] 2 | ynfL | LysR family transcriptional regulator |
| * | * | ÷ | NZ_CP009273 | 1703422 | 1703432 | 11 | 3 [0] | [0] 2 | rsxD | electron transport complex subunit RsxD |
| * | * | ÷ | NZ_CP009273 | 1887490 | 1887505 | 16 | 2 [1] | [1] 2 | [yoaA] | [yoaA] |
| * | * | ÷ | NZ_CP009273 | 1922581 | 1922591 | 11 | 2 [1] | [1] 2 | ptrB | oligopeptidase B |
| * | * | ÷ | NZ_CP009273 | 1973016 | 1973043 | 28 | 2 [1] | [1] 2 | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| * | * | ÷ | NZ_CP009273 | 1981381 | 1981475 | 95 | 4 [1] | [1] 2 | [azuC] | [azuC] |
| * | * | ÷ | NZ_CP009273 | 1983056 | 1983080 | 25 | 2 [1] | [1] 2 | yecH/tyrP | YecH family protein/tyrosine transporter TyrP |
| * | * | ÷ | NZ_CP009273 | 2033088 | 2033211 | 124 | 3 [1] | [1] 2 | msrP | protein‑methionine‑sulfoxide reductase catalytic subunit MsrP |
| * | * | ÷ | NZ_CP009273 | 2042367 | 2042388 | 22 | 2 [1] | [0] 2 | yeeJ | inverse autotransporter adhesin YeeJ |
| * | * | ÷ | NZ_CP009273 | 2051390 | 2051432 | 43 | 2 [1] | [1] 2 | yeeN/BW25113_RS10360 | YebC/PmpR family DNA‑binding transcriptional regulator/tRNA‑Asn |
| * | * | ÷ | NZ_CP009273 | 2075175 | 2075187 | 13 | 2 [1] | [0] 2 | dacD | serine‑type D‑Ala‑D‑Ala carboxypeptidase DacD |
| * | * | ÷ | NZ_CP009273 | 2144447 | 2144494 | 48 | 2 [1] | [1] 2 | [yegI] | [yegI] |
| * | * | ÷ | NZ_CP009273 | 2174603 | 2174628 | 26 | 2 [1] | [1] 2 | yegV | carbohydrate kinase family protein |
| * | * | ÷ | NZ_CP009273 | 2272164 | 2272185 | 22 | 2 [1] | [1] 2 | bcr | multidrug efflux MFS transporter Bcr |
| * | * | ÷ | NZ_CP009273 | 2295679 | 2295687 | 9 | 2 [1] | [1] 2 | napA | periplasmic nitrate reductase subunit alpha |
| * | * | ÷ | NZ_CP009273 | 2321403 | 2321469 | 67 | 3 [1] | [1] 2 | yfaP | YfaP family protein |
| * | * | ÷ | NZ_CP009273 | 2341486 | 2341510 | 25 | 2 [1] | [1] 2 | nrdB | ribonucleotide‑diphosphate reductase subunit beta |
| * | * | ÷ | NZ_CP009273 | 2399959 | 2399979 | 21 | 2 [1] | [1] 2 | lrhA | transcriptional regulator LrhA |
| * | * | ÷ | NZ_CP009273 | 2436273 | 2436308 | 36 | 2 [1] | [1] 2 | mnmC | bifunctional tRNA (5‑methylaminomethyl‑2‑thiouridine)(34)‑methyltransferase MnmD/FAD‑dependent 5‑carboxymethylaminomethyl‑2‑thiouridine(34) oxidoreductase MnmC |
| * | * | ÷ | NZ_CP009273 | 2491984 | 2492014 | 31 | 2 [1] | [1] 2 | alaC/ypdA | alanine transaminase/two‑component system sensor histidine kinase YpdA |
| * | * | ÷ | NZ_CP009273 | 2505218 | 2505318 | 101 | 2 [1] | [1] 2 | mntH | Nramp family divalent metal transporter |
| * | * | ÷ | NZ_CP009273 | 2512943 | 2512978 | 36 | 2 [1] | [1] 2 | gltX | glutamate‑‑tRNA ligase |
| * | * | ÷ | NZ_CP009273 | 2543418 | 2543475 | 58 | 2 [1] | [1] 2 | yfeX | porphyrinogen peroxidase |
| * | * | ÷ | NZ_CP009273 | 2563799 | 2563838 | 40 | 2 [1] | [0] 2 | eutE | aldehyde dehydrogenase EutE |
| * | * | ÷ | NZ_CP009273 | 2588549 | 2588588 | 40 | 2 [1] | [1] 2 | tmcA | tRNA cytosine(34) acetyltransferase TmcA |
| * | * | ÷ | NZ_CP009273 | 2604910 | 2604920 | 11 | 2 [1] | [1] 2 | hyfJ | hydrogenase 4 assembly chaperone HyfJ |
| * | * | ÷ | NZ_CP009273 | 2609088 | 2609118 | 31 | 2 [1] | [1] 2 | yfgO | AI‑2E family transporter |
| * | * | ÷ | NZ_CP009273 | 2630860 | 2630880 | 21 | 3 [1] | [1] 2 | bamB | outer membrane protein assembly factor BamB |
| * | * | ÷ | NZ_CP009273 | 2638503 | 2638519 | 17 | 2 [1] | [1] 4 | pbpC | peptidoglycan glycosyltransferase PbpC |
| * | * | ÷ | NZ_CP009273 | 2651466 | 2651524 | 59 | 2 [1] | [1] 2 | hscA | Fe‑S protein assembly chaperone HscA |
| * | * | ÷ | NZ_CP009273 | 2674119 | 2674141 | 23 | 2 [0] | [1] 2 | yphG | DUF5107 domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 2687958 | 2688020 | 63 | 2 [1] | [1] 2 | purL | phosphoribosylformylglycinamidine synthase |
| * | * | ÷ | NZ_CP009273 | 2707461 | 2707521 | 61 | 2 [1] | [1] 2 | srmB | ATP‑dependent RNA helicase SrmB |
| * | * | ÷ | NZ_CP009273 | 2961030 | 2961062 | 33 | 2 [1] | [1] 2 | ptsP | phosphoenolpyruvate‑‑protein phosphotransferase |
| * | * | ÷ | NZ_CP009273 | 3087953 | 3087968 | 16 | 3 [1] | [1] 2 | yggR | type IV pilus twitching motility protein PilT |
| * | * | ÷ | NZ_CP009273 | 3286002 | 3286016 | 15 | 2 [1] | [1] 2 | rsmI | 16S rRNA (cytidine(1402)‑2'‑O)‑methyltransferase |
| * | * | ÷ | NZ_CP009273 | 3819724 | 3819738 | 15 | 2 [1] | [1] 2 | recG | ATP‑dependent DNA helicase RecG |
| * | * | ÷ | NZ_CP009273 | 4205273 | 4205334 | 62 | 2 [1] | [1] 2 | metA/aceB | homoserine O‑succinyltransferase/malate synthase A |
| * | * | ÷ | NZ_CP009273 | 4316830 | 4316859 | 30 | 4 [1] | [0] 2 | yjdM/crfC | zinc ribbon domain‑containing protein YjdM/clamp‑binding protein CrfC |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 13 (1.050) | 13/170 | 0.1 | 52.0% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 12 (0.970) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 10 (0.810) | 4 (0.400) | 4/138 | 0.7 | 44.2% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | 1205075 = | 2 (0.200) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1391494 | NA (NA) | 11 (0.900) | 9/168 | 0.3 | 100% | intergenic (+145/‑128) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_CP009273 | 1972747 = | 0 (0.000) | intergenic (‑293/‑487) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC | |||||
| * | ? | NZ_CP009273 | = 1972751 | 0 (0.000) | 19 (1.530) | 13/170 | 0.1 | 100% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||