Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2491984	2492014	31	2 [1]	[1] 2	alaC/ypdA	alanine transaminase/two‑component system sensor histidine kinase YpdA

TGACGTTAAATGAGGAACTCTGCTTTAAAAACAGGAAATTTATCTGCGCTAACAAGAAAATTACCACTCATTTTATTAACATAATAATTTCAATAAATTTAC  >  NZ_CP009273/2491894‑2491995                                                                                          |             tGACGTTAAATGAGGAACTCTGCTTTAAAAACAGGAAATTTATCTGCGCTAACAAGAAAATTACCACTCATTTTATTAACATAATAAttt              >  1:54856/1‑90 (MQ=255)             aGGAACTCTGCTTTAAAAACAGGAAATTTATCTGCGCTAACAAGAAAATTACCACTCATTTTATTAACATAATAATTTCAATAAATTTAc  <  1:99722/90‑1 (MQ=255)                                                                                          |             TGACGTTAAATGAGGAACTCTGCTTTAAAAACAGGAAATTTATCTGCGCTAACAAGAAAATTACCACTCATTTTATTAACATAATAATTTCAATAAATTTAC  >  NZ_CP009273/2491894‑2491995

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑