Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1316332	1316364	33	2 [0]	[1] 2	trpE	anthranilate synthase component I

AATAGGCCGCCAGCGGTGACGGGCAGGGCAGAGAGAAACGGCGAGATGGCACCACCTGGAAAATTTCTCCAGCGCGAATCGCTTTTTGCAACAAA  >  NZ_CP009273/1316360‑1316454      |                                                                                          aaTAGGCCGCCAGCGGTGACGGGCAGGGCAGAGAGAAACGGCGAGATGGCACCACCTGGAAAATTTCTCCAGCGCGAATCGCTTTTTGca       <  2:167936/90‑1 (MQ=255)      gccgccCGCGGTGACGGGCGGGGCAGAGAGAAACGGCGCGGTGGCCCCGCCTGGAAAATTTCTCCAGCGCGAATCGCTTTTTGcaacaac  <  1:221574/90‑2 (MQ=255)      |                                                                                          AATAGGCCGCCAGCGGTGACGGGCAGGGCAGAGAGAAACGGCGAGATGGCACCACCTGGAAAATTTCTCCAGCGCGAATCGCTTTTTGCAACAAA  >  NZ_CP009273/1316360‑1316454

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑