mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 47 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,901,121 | 0 | A | G | 72.7% | 24.6 / 13.1 | 22 | D202D (GAT→GAC) | pstB | phosphate ABC transporter ATP‑binding protein PstB |
| * | NZ_CP009273 | 2,434,529 | 0 | A | C | 70.6% | 27.6 / 10.0 | 17 | F186V (TTT→GTT) | fabB | beta‑ketoacyl‑ACP synthase I |
| * | NZ_CP009273 | 3,728,024 | 0 | A | C | 68.4% | 25.2 / 13.7 | 19 | S315S (TCA→TCC) | xylH | xylose ABC transporter permease XylH |
| * | NZ_CP009273 | 987,365 | 0 | A | G | 66.7% | 6.0 / 10.7 | 15 | N430D (AAT→GAT) | pepN | aminopeptidase N |
| * | NZ_CP009273 | 3,931,448 | 0 | G | T | 66.7% | 10.7 / 13.5 | 15 | L265F (TTG→TTT) | rbsK | ribokinase |
| * | NZ_CP009273 | 2,319,929 | 0 | T | G | 64.3% | ‑6.3 / 11.3 | 14 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NZ_CP009273 | 575,614 | 0 | A | G | 63.2% | 6.5 / 17.7 | 19 | intergenic (+72/+93) | BW25113_RS02885/ylcI | hypothetical protein/YlcI/YnfO family protein |
| * | NZ_CP009273 | 1,941,604 | 0 | A | C | 62.5% | 16.4 / 12.9 | 16 | G10G (GGT→GGG) | ruvC | crossover junction endodeoxyribonuclease RuvC |
| * | NZ_CP009273 | 3,113,649 | 0 | T | G | 61.1% | 12.4 / 18.6 | 18 | K330N (AAA→AAC) | glcA | glycolate permease GlcA |
| * | NZ_CP009273 | 2,358,444 | 0 | A | . | 60.0% | ‑5.0 / 16.5 | 10 | coding (412/426 nt) | nudI | nucleoside triphosphatase NudI |
| * | NZ_CP009273 | 3,779,872 | 0 | T | G | 60.0% | 8.4 / 10.5 | 15 | V418G (GTT→GGT) | gpmM | 2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase |
| * | NZ_CP009273 | 499,316 | 0 | A | C | 58.3% | 7.5 / 11.9 | 12 | G279G (GGT→GGG) | fsr | fosmidomycin MFS transporter |
| * | NZ_CP009273 | 3,785,687 | 0 | G | C | 58.3% | 4.8 / 10.1 | 12 | G75G (GGC→GGG) | kbl | glycine C‑acetyltransferase |
| * | NZ_CP009273 | 4,500,063 | 0 | T | G | 58.3% | 4.8 / 11.4 | 12 | intergenic (+113/+444) | BW25113_RS25830/fecE | hypothetical protein/Fe(3+) dicitrate ABC transporter ATP‑binding protein FecE |
| * | NZ_CP009273 | 2,189,312 | 0 | A | G | 57.1% | ‑1.6 / 12.4 | 14 | T512A (ACC→GCC) | metG | methionine‑‑tRNA ligase |
| * | NZ_CP009273 | 2,840,042 | 0 | G | T | 57.1% | 9.6 / 18.0 | 14 | Q244K (CAA→AAA) | hycD | formate hydrogenlyase subunit HycD |
| * | NZ_CP009273 | 4,350,381 | 0 | G | C | 57.1% | 2.0 / 16.1 | 14 | G457G (GGC→GGG) | cadC | lysine decarboxylation/transport transcriptional activator CadC |
| * | NZ_CP009273 | 642,203 | 0 | T | G | 54.5% | ‑4.2 / 12.2 | 11 | T255P (ACC→CCC) | citG | triphosphoribosyl‑dephospho‑CoA synthase CitG |
| * | NZ_CP009273 | 2,348,717 | 0 | G | C | 54.5% | ‑6.4 / 13.7 | 11 | G325A (GGC→GCC) | glpB | glycerol‑3‑phosphate dehydrogenase subunit GlpB |
| * | NZ_CP009273 | 3,996,864 | 0 | T | G | 54.5% | 8.5 / 10.2 | 11 | V225V (GTA→GTC) | rarD | EamA family transporter RarD |