Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3087953	3087968	16	3 [1]	[1] 2	yggR	type IV pilus twitching motility protein PilT

ATGCGGCCCGCAATCCCGATGCGAACGTCATACAGTGCAAACCAATTTCCCGCTGCTGGATCAAACATCGCTGGCTGGCATAGAGATATT  >  NZ_CP009273/3087872‑3087961                                                                                 |          aTGCGGCCCGCAATCCCGATGCGAACGTCATACAGTGCAAACCAATTTCCCGCTGCTGGATCAAACATCGCTGGCTGGCATAGAGATAtt  >  2:114620/1‑90 (MQ=255)                             cATACAGTGCAAACCAATTTCCCGCTGCTGGATCAAACATCGCTGGCTGGCAt           <  1:230704/53‑1 (MQ=255)                             cATACAGTGCAAACCAATTTCCCGCTGCTGGATCAAACATCGCTGGCTGGCAt           >  2:230704/1‑53 (MQ=255)                                                                                 |          ATGCGGCCCGCAATCCCGATGCGAACGTCATACAGTGCAAACCAATTTCCCGCTGCTGGATCAAACATCGCTGGCTGGCATAGAGATATT  >  NZ_CP009273/3087872‑3087961

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑