mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,905 | T→G | L28R (CTC→CGC) | folA → | type 3 dihydrofolate reductase |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| RA | 3,512,090 | +GC | coding (334/522 nt) | aroK ← | shikimate kinase AroK |
| RA | 3,754,231 | G→T | R127S (CGC→AGC) | selA ← | L‑seryl‑tRNA(Sec) selenium transferase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 356981 | 357567 | 587 | 3 [0] | [0] 2 | lacA | galactoside O‑acetyltransferase |
| * | * | ÷ | NZ_CP009273 | 2463207 | 2463258 | 52 | 2 [1] | [1] 3 | BW25113_RS12270 | hypothetical protein |
| * | * | ÷ | NZ_CP009273 | 3629106 | 3629967 | 862 | 28 [0] | [1] 2 | [yhiM]–[yhiN] | [yhiM],[yhiN] |
| * | * | ÷ | NZ_CP009273 | 3630026 | 3631404 | 1379 | 2 [1] | [0] 2 | [yhiN]–[pitA] | [yhiN],[pitA] |
| * | * | ÷ | NZ_CP009273 | 3631486 | 3631728 | 243 | 2 [0] | [1] 3 | pitA | inorganic phosphate transporter PitA |
| * | * | ÷ | NZ_CP009273 | 3631806 | 3631823 | 18 | 2 [0] | [1] 2 | pitA | inorganic phosphate transporter PitA |
| * | * | ÷ | NZ_CP009273 | 3631912 | 3632759 | 848 | 2 [1] | [1] 2 | [pitA]–[uspB] | [pitA],[uspB] |
| * | * | ÷ | NZ_CP009273 | 3632786 | 3633110 | 325 | 2 [1] | [1] 3 | [uspB] | [uspB] |
| * | * | ÷ | NZ_CP009273 | 3633201 | 3636051 | 2851 | 3 [1] | [1] 2 | uspA–[rsmJ] | uspA,BW25113_RS26225,BW25113_RS26230,dtpB,[rsmJ] |
| * | * | ÷ | NZ_CP009273 | 3636084 | 3637328 | 1245 | 2 [1] | [1] 2 | [rsmJ]–[prlC] | [rsmJ],[prlC] |
| * | * | ÷ | NZ_CP009273 | 3637419 | 3637780 | 362 | 2 [1] | [1] 2 | prlC | oligopeptidase A |
| * | * | ÷ | NZ_CP009273 | 3638039 | 3638128 | 90 | 2 [1] | [1] 2 | prlC | oligopeptidase A |
| * | * | ÷ | NZ_CP009273 | 3638214 | 3638363 | 150 | 2 [1] | [1] 2 | prlC | oligopeptidase A |
| * | * | ÷ | NZ_CP009273 | 3638401 | 3639017 | 617 | 2 [1] | [0] 2 | [prlC]–[rlmJ] | [prlC],[rlmJ] |
| * | * | ÷ | NZ_CP009273 | 3639108 | 3639362 | 255 | 2 [0] | [1] 2 | rlmJ | 23S rRNA (adenine(2030)‑N(6))‑methyltransferase |
| * | * | ÷ | NZ_CP009273 | 3639413 | 3641671 | 2259 | 2 [1] | [1] 2 | [rlmJ]–dinQ | [rlmJ],gorA,dinQ |
| * | * | ÷ | NZ_CP009273 | 3641735 | 3642004 | 270 | 2 [1] | [0] 2 | [arsR] | [arsR] |
| * | * | ÷ | NZ_CP009273 | 3642095 | 3642392 | 298 | 2 [0] | [0] 2 | [arsR]–[arsB] | [arsR],[arsB] |
| * | * | ÷ | NZ_CP009273 | 3642483 | 3643800 | 1318 | 2 [0] | [0] 2 | [arsB]–[arsC] | [arsB],[arsC] |
| * | * | ÷ | NZ_CP009273 | 3643843 | 3644163 | 321 | 2 [0] | [1] 2 | [arsC] | [arsC] |
| * | * | ÷ | NZ_CP009273 | 3644232 | 3646512–3645390 | 1159–2281 | 2 [1] | [0] 2 | BW25113_RS18155–[BW25113_RS18160] | BW25113_RS18155,[BW25113_RS18160] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 29 (1.230) | 21/172 | 0.1 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 3 (0.130) | 20 (1.040) | 15/140 | 0.2 | 88.0% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | 1205075 = | 3 (0.160) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 3 (0.130) | 11 (0.570) | 10/140 | 0.5 | 80.2% | coding (305/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | = 1205058 | 3 (0.160) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1391494 | NA (NA) | 13 (0.560) | 8/170 | 1.0 | 100% | intergenic (+145/‑128) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_CP009273 | 1972747 = | 0 (0.000) | intergenic (‑293/‑487) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC | |||||
| * | ? | NZ_CP009273 | = 1972751 | 1 (0.040) | 40 (1.700) | 23/172 | 0.1 | 97.6% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||
| * | ? | NZ_CP009273 | = 3629105 | 0 (0.000) | 27 (1.160) | 17/170 | 0.2 | 100% | coding (905/1053 nt) | yhiM | DUF2776 domain‑containing protein |
| ? | NZ_CP009273 | 3645397 = | NA (NA) | pseudogene (747/747 nt) | BW25113_RS18155 | hypothetical protein | |||||
| * | ? | NZ_CP009273 | = 4532507 | 11 (0.470) | 6 (0.280) | 5/154 | 1.3 | 28.7% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | = 4532803 | 20 (0.950) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||