mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 48 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 822,963 | 0 | T | G | 64.7% | 2.1 / 14.8 | 17 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 822,955 | 0 | T | G | 62.5% | 4.0 / 15.4 | 17 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 2,132,680 | 0 | A | C | 61.5% | 9.4 / 12.4 | 13 | D433A (GAC→GCC) | yegH | TerC family protein |
| * | NZ_CP009273 | 2,380,342 | 0 | C | A | 61.5% | 2.6 / 12.8 | 13 | intergenic (+32/‑71) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 2,380,362 | 0 | C | T | 61.5% | ‑6.6 / 11.1 | 13 | intergenic (+52/‑51) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 228,181 | 0 | C | T | 60.0% | 1.8 / 14.6 | 15 | F191F (TTC→TTT) | yafD | endonuclease/exonuclease/phosphatase family protein |
| * | NZ_CP009273 | 1,026,452 | 0 | A | C | 60.0% | 9.9 / 16.3 | 20 | G141G (GGT→GGG) | yccA | FtsH protease modulator YccA |
| * | NZ_CP009273 | 2,367,400 | 0 | A | C | 60.0% | 7.5 / 12.5 | 15 | G361G (GGT→GGG) | menE | o‑succinylbenzoate‑‑CoA ligase |
| * | NZ_CP009273 | 2,978,077 | 0 | G | C | 60.0% | 2.0 / 10.3 | 10 | P292R (CCG→CGG) | yqeF | acetyl‑CoA C‑acetyltransferase |
| * | NZ_CP009273 | 3,781,385 | 0 | T | G | 60.0% | 7.1 / 18.2 | 26 | G396G (GGT→GGG) | envC | murein hydrolase activator EnvC |
| * | NZ_CP009273 | 108,789 | 0 | T | C | 59.1% | 8.2 / 19.1 | 22 | S100G (AGC→GGC) | zapD | cell division protein ZapD |
| * | NZ_CP009273 | 2,089,567 | 0 | T | G | 59.1% | 11.0 / 19.0 | 22 | G81G (GGT→GGG) | hisF | imidazole glycerol phosphate synthase subunit HisF |
| * | NZ_CP009273 | 700,041 | 0 | T | G | 58.8% | 10.3 / 14.2 | 17 | G214G (GGT→GGG) | nagE | PTS N‑acetyl glucosamine transporter subunit IIABC |
| * | NZ_CP009273 | 1,906,011 | 0 | T | G | 58.3% | 6.9 / 12.4 | 12 | T275P (ACC→CCC) | htpX | protease HtpX |
| * | NZ_CP009273 | 2,738,448 | 0 | A | C | 57.9% | 4.6 / 16.7 | 19 | V84G (GTG→GGG) | trmD | tRNA (guanosine(37)‑N1)‑methyltransferase TrmD |
| * | NZ_CP009273 | 228,175 | 0 | A | G | 57.1% | 10.0 / 14.9 | 14 | G189G (GGA→GGG) | yafD | endonuclease/exonuclease/phosphatase family protein |
| * | NZ_CP009273 | 688,394 | 0 | A | C | 56.2% | 8.2 / 10.2 | 16 | G147G (GGT→GGG) | ybeZ | PhoH family protein |
| * | NZ_CP009273 | 2,380,331 | 0 | T | G | 56.2% | 10.8 / 14.9 | 16 | intergenic (+21/‑82) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 6,994 | 0 | A | C | 55.0% | 12.5 / 17.7 | 20 | G322G (GGT→GGG) | yaaJ | sodium:alanine symporter family protein |
| * | NZ_CP009273 | 1,158,192 | 0 | A | C | 54.5% | 8.7 / 12.7 | 11 | K33N (AAA→AAC) | lpoB | penicillin‑binding protein activator LpoB |