| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 688,394 | 0 | A | C | 56.2% | 8.2 / 10.2 | 16 | G147G (GGT→GGG) | ybeZ | PhoH family protein |
| Reads supporting (aligned to +/- strand): ref base A (3/4); new base C (0/9); total (3/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.25e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.18e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CTGCCGGACGAGTCAGCAGAATACGGCGAATTTCCTGACGCTCCAGGGCATCAACTGCCGCAGCCACTGCCAGGTAGGTTTTACCCGTACCCGCCGGGCCAACGCCGAAGGTAATGTCATGGTCGAGAATATTGGCGATGTACTGCGCCTGGTTTGGCGTGCGCGGCTTAAT > NZ_CP009273/688312‑688483 | cTGCCGGAGGAGTCAGAAAAATACGGCGAATTCCCTGCCGCTCCAGGGCATCAACTGCCGCAGCCACTGCCAGGTAGGTTTtacccgtac < 2:408057/90‑1 (MQ=255)cTGCCGGACGAGTCAGCAGAATACGGCGAATTTCCTGACGCTCCAGGGCATCAACTGCCGCAGCCACTGCCAGGTAGGTTTtacccgtac > 1:425154/1‑90 (MQ=255) gCCGGACGAGTCAGCAGAATACGGCGAATTTCCTGACGCTCCAGGGCATCAACTGCCGCAGCCACTGCCAGGTAGGTTTtacccgtaccc > 1:292547/1‑90 (MQ=255) gCCGGACGAGTCAGCAGAATACGGCGAATTTCCTGACGCTCCAGGGCATCAACTGCCGCAGCCACTGCCAGGTAGGTTTtacccgtaccc > 2:164005/1‑90 (MQ=255) gTCAGCAAAATACGGCGATTTTCCTGACGCTCCAGGGCATCAACTGCCGCAGCCACTGCCAGGTAGGTTTTCCCCGTACCCGCCGGGCCa < 2:565106/90‑1 (MQ=255) tCAGCAGAATACGGCGAATTTCCTGACGCTCCAGGGCATCAACTGCCGCAGCCACTGCCAGGTAGGTTTTACCCGTACCCGCCGGGCCaa < 2:32045/90‑1 (MQ=255) aacaCGGCGATTTTCCTGGCCCCCCGGGGCAAAAACTCCCGCACCCCTTCCCAGGTAGGTTTTCCCCGCACCCGCCGGGCCAACGCCGaa < 1:111729/87‑1 (MQ=255) aaTCCGGGGAATTTCCTGGCGCCCCAGGGCATCAACTGCCGCAGCCACTGCCAGGTAGGTTTTACCCGTACCCGCCGGGCCAACGCCGaa < 2:578330/90‑1 (MQ=255) aaTACGGCGAATTTCCTGACGCTCCAGGGCATCAACTGCCGCAGCCACTGCCAGGTAGGTTTTACCCGTACCCGCCGGGCCAACGCCGaa < 2:59622/90‑1 (MQ=255) aTACGGCGAATTTCCTGACGCTCCAGGGCATCAACTGCCGCAGCCACTGCCAGGTAGGTTTTACCCGTACCCGCCGGGCCAACGCCGAAg > 2:389425/1‑90 (MQ=255) cGGCGATTTTCCTGCCGCCCCAGGGCATAACCTGCCGCAGCCACTGCCAGGTAGGTTTTCCCCGTACCCGCCGGGCCAACGCCGAAGGTa < 2:425154/90‑1 (MQ=255) cGGCGAATTTCCTGACGCTCCAGGGCATCAACTGCCGCAGCCACTGCCAGGTAGGTTTTACCCGTACCCGCCGGGCCAACGCCGAAGGTa > 1:277163/1‑90 (MQ=255) cGGCAAATTCCCTGACCCCCCGGGGCATCACCTGCCGCAGCCACTGCCAGGTAGGTTTTACCCGTACCCGCCGGGCCAACGCCGAAGGTa < 2:580464/90‑1 (MQ=255) tttCCTGACGCTCCAGGGATTCACCTGCAGCGTCCACTGCCGGGTAGGTTTTCCCCGTCCCCGCCGGGCCAACGCCGAAGGTAATGTCAt < 1:120815/90‑1 (MQ=255) tCCAGGGCATCACCTGCCGCAGCCACTGCCAGGTAGGTTTTCCCCGTACCCGCCGGGCCAACGCCGAAGGTAATGTCATGGTCGAGAata < 1:261182/90‑1 (MQ=255) aCTGCCGCAGCCACTGCCAGGTAGGTTTTCCCCGTACCCGCCGGGCCAACGCCGAAGGTAATGTCATGGTCGAGAATATTGGCGATGTAc < 1:154130/90‑1 (MQ=255) taggtTTTCCCCGTCCCCGCCGGGCCAACGCCGAAGGTAATGTCATGGTCGAGAATATTGGCGATGTACTGCGCCTGGTTTGGCGTgcgc < 2:379531/90‑1 (MQ=255) taggtTTTCCCCGTCCCCGCCGGGCCAACGCCGAAGGTAATGTCATGGTCGAGAATATTGGCGATGTACTGCGCCTGGTTTGGCGTgcgc < 1:139985/90‑1 (MQ=255) gtTTTCCCCGTCCCCGCCGGGCCAACGCCGAAGGTAATGTCATGGTCGAGAATATTGGCGATGTACTGCGCCTGGTTTGGCGTGCGCGGc < 2:83315/90‑1 (MQ=255) ttttACCCGTACCCGCCGGGCCAACGCCGAAGGTAATGTCATGGTCGAGAATATTGGCGATGTACTGCGCCTGGTTTGGCGTGCGCGGCt > 1:426175/1‑90 (MQ=255) acccgtacccgCCGGGCCAACGCCGAAGGTAATGTCATGGTCGAGAATATTGGCGATGTACTGCGCCTGGTTTGGCGTGCGCGGCTTAAt > 1:616174/1‑90 (MQ=255) | CTGCCGGACGAGTCAGCAGAATACGGCGAATTTCCTGACGCTCCAGGGCATCAACTGCCGCAGCCACTGCCAGGTAGGTTTTACCCGTACCCGCCGGGCCAACGCCGAAGGTAATGTCATGGTCGAGAATATTGGCGATGTACTGCGCCTGGTTTGGCGTGCGCGGCTTAAT > NZ_CP009273/688312‑688483 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |