| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,026,452 | 0 | A | C | 60.0% | 9.9 / 16.3 | 20 | G141G (GGT→GGG) | yccA | FtsH protease modulator YccA |
| Reads supporting (aligned to +/- strand): ref base A (5/3); new base C (0/12); total (5/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.61e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.09e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AAGACCGCGCTGATCGCCAGATGCAGAGCAGGCAGCTGCAGGAAGATATTCGCAACCATACCAATCAGCACCACCACAATACCCGCCATCAGCATACCGCCGAGGAACGACATATCTTTGCGGGTGGTCAGCACATATGCAGAGCAGCAGAAGAACACTAACGC > NZ_CP009273/1026372‑1026535 | aaGACCGCGCTGATCGCCAGATGCAGAGCAGGCAGCTGCAGGAAGATATTCGCAACCATACCAATCAGCACCACCACAATACCCGCCATc > 2:111136/1‑90 (MQ=255)aaGACCGCGCTGACCGCCAGATGCAGAGCAGGCAGCTGCAGGAAGATATTCGCAACCATACCAACCAGCCCCCCCACAATCCCCGCCATc < 1:445922/90‑1 (MQ=255) cgcgCTGATCGCCAGATGCAGAGCAGGCAGCTGCAGGAAGATATTCGCAACCATCCCAACCAGCCCCACCACAATACCCGCCATCAGCAt < 2:476693/90‑1 (MQ=255) aGATGCAGAGCAGGCAGCTGCAGGAAGATATTCGCAACCATACCAATCAGCACCACCACAATACCCGCCATCAGCATACCGCCGAGGAAc < 2:232303/90‑1 (MQ=255) aGATCCAGAGCAGGCAGCTGCGGGAAGATATTCGCACCCATCCCAATCAGCACCACCCCAATCCCCGCCATCAGCATACCGCCGAGGAAc < 2:444292/90‑1 (MQ=255) agagCAGGCAGCTGCAGGAAGATATTCGCAACCATCCCAATCAGCCCCCCCACAATCCCCGCCATCAGCATACCGCCGAGGAACGACata < 1:46942/90‑1 (MQ=255) gCTGCAGGAAGATATTCGCAACCATACCAATCAGCCCCCCCACAATCCCCGCCATCAGCATACCGCCGAGGAACGACATATCTTTGCggg < 2:569518/90‑1 (MQ=255) cTGCAGGAAGATATTCGCAACCATACCAATCAGCACCACCACAATCCCCGCCATCAGCATACCGCCGAGGAACGACATATCTTTGCGggt < 2:255483/90‑1 (MQ=255) ggAAGATATTCGCAACCATACCAATCAGCCCCCCCACAATCCCCGCCATCAGCATACCGCCGAGGAACGACATATCTTTGCGGGTGGTCa < 1:192514/90‑1 (MQ=255) ggAAGATATTCCCAACCATACCAATCAGCACCACCACAATACCCGCCATCAGCATACCGCCGAGGAACGACATATCTTTGCGGGTGGTCa < 2:1372/90‑1 (MQ=255) gaaaGATATCCGCAACCATACCAATCAGCCCCCCCACAATCCCCGCCATCAGCATACCGCCGAGGAACGACATATCTTTGCGGGTGGTCa < 2:571372/88‑1 (MQ=255) gATATTCGCAACCATACCAATCAGCACCACCACAATACCCGCCATCAGCATACCGCCGAGGAACGACATATCTTTGCGGGTCGTCAGcac > 2:534081/1‑90 (MQ=255) atatCCGCACCCATACCAACCAGCCCCCCCACAATCCCCGCCATCAGCATACCGCCGAGGAACGACATATCTTTGCGGGTGGTCAGcaca < 1:119578/90‑1 (MQ=255) aaccaaaccaATCAGCACCACCACAATCCCCGCCATCAGCATACCGCCGAGGAACGACATATCTTTGCGGGTGGTCAGCACATATGCaga < 2:437349/90‑1 (MQ=255) tACCAATCAGCCCCCCCACAATCCCCGCCATCAGCATACCGCCGAGGAACGACATATCTTTGCGGGTGGTCAGCACATATGCAGagcagc < 1:37264/90‑1 (MQ=255) tACAAACCAGCCCCACCACAATCCCCGCCATCAGCATACCGCCGAGGAACGACATATCTTTGCGGGTGGTCAGCACATATGCAGagcagc < 1:129091/90‑1 (MQ=255) gCACCACCACAATACCCGCCATCAGCATACCGCCGAGGAACGACATATCTTTGCGGGTGGTCAGCACATATGCAGAGCAGCAGAAGAaca > 2:389728/1‑90 (MQ=255) gCACCACCACAATACCCGCCATCAGCATACCGCCGAGGAACGACATATCTTTGCGGGTGGTCAGCACATATGCAGAGCAGCAGAAGAaca > 1:3927/1‑90 (MQ=255) accacAATACCCGCCATCAGCATACCGCCGAGGAACGACATATCTTTGCGGGTGGTCAGCACATATGCAGAGCAGCAGAAGAACACTAAc > 2:577976/1‑90 (MQ=255) cacaATCCCCGCCATCAGCATACCGCCGAGGAACGACATATCTTTGCGGGTGGTCAGCACATATGCAGAGCAGCAGAAGAACACTAACGc < 1:118943/90‑1 (MQ=255) | AAGACCGCGCTGATCGCCAGATGCAGAGCAGGCAGCTGCAGGAAGATATTCGCAACCATACCAATCAGCACCACCACAATACCCGCCATCAGCATACCGCCGAGGAACGACATATCTTTGCGGGTGGTCAGCACATATGCAGAGCAGCAGAAGAACACTAACGC > NZ_CP009273/1026372‑1026535 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |