| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 3,512,090 | +GC | coding (334/522 nt) | aroK ← | shikimate kinase AroK |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,512,088 | 1 | . | G | 100.0% | 43.1 / NA | 13 | A112A (GCA→GCC) | aroK | shikimate kinase AroK |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (5/8); total (5/8) | |||||||||||
| * | NZ_CP009273 | 3,512,088 | 2 | . | C | 100.0% | 43.9 / NA | 13 | A112A (GCA→GCG) | aroK | shikimate kinase AroK |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (5/8); total (5/8) | |||||||||||
TTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCGGCGGTGTTTCAACGTGCAGCAACGGGCGTTTTTTATCACGCTGCGTGCGT‑‑GCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGATTT > NZ_CP009273/3512002‑3512168 || ttGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCGGCGGTGTTTCAACGTGCAGCAACGGGCGTTTTTTATCACGCTGCgtgcgt‑‑gcg > 2:437212/1‑89 (MQ=255) aaCGCTTCCAGAACTTCACGCGGCGGTGTTTCAACGTGCAGCAACGGGCGTTTTTTATCACGCTGCGTGCGTGCGCAAGTTGCTTTTCGa < 1:271016/90‑1 (MQ=255) ttCCAGAACTTCACGCGGCGGTGTTTCAACGTGCAGCAACGGGCGTTTTTTATCACGCTGCGTGCGTGCGCAAGTTGCTTTTCGATGGTc < 1:352375/90‑1 (MQ=255) ttCCAGAACTTCACGCGGCGGTGTTTCAACGTGCAGCAACGGGCGTTTTTTATCACGCTGCGTGCGTGCGCAAGTTGCTTTTCGATGGTc < 1:482810/90‑1 (MQ=255) gAACTTCACGCGGCGGTGTTTCAACGTGCAGCAACGGGCGTTTTTTATCACGCTGCGTGCGTGCGCAAGTTGCTTTTCGATGGTCGTTTc < 1:166742/90‑1 (MQ=255) ttCACGCGGCGGTGTTTCAACGTGCAGCAACGGGCGTTTTTTATCACGCTGCGTGCGTGCGCAAGTTGCTTTTCGATGGTCGTTTCAAGa > 2:357863/1‑90 (MQ=255) tCACGCGGCGGTGTTTCAACGTGCAGCAACGGGCGTTTTTTATCACGCTGCGTGCGTGCGCAAGTTGCTTTTCGATGGTCGTTTCAAGAt < 2:120080/90‑1 (MQ=255) gtgtTTCAACGTGCAGCAACGGGCGTTGTTTATCACGCTTCGTGCGTGCGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAAc > 1:400414/1‑90 (MQ=255) cGTGCAGCAACGGGCGTTTTTTATCACGCTGCGTGCGTGCGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGc < 1:84384/90‑1 (MQ=255) gTGCAGCAACGGGCGTTTTTTATCACGCTGCGTGCGTGCGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCg > 2:34553/1‑90 (MQ=255) aaCGGGCGTTTTTTATCACGCTGCGTGCGTGCGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGAc < 1:138441/90‑1 (MQ=255) gggCGTTTTTTATCACGCTGCGTGCGTGCGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGt > 1:109953/1‑90 (MQ=255) gggCGTTTTTTATCACGCTGCGTGCGTGCGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGt > 1:565356/1‑90 (MQ=255) aCGCTGCGTGCGTGCGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACgg < 2:385507/90‑1 (MQ=255) gcgtgcgtgcGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGAttt > 1:27508/1‑90 (MQ=255) || TTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCGGCGGTGTTTCAACGTGCAGCAACGGGCGTTTTTTATCACGCTGCGTGCGT‑‑GCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGATTT > NZ_CP009273/3512002‑3512168 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |