Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3638401	3639017	617	2 [1]	[0] 2	[prlC]–[rlmJ]	[prlC],[rlmJ]

GGTCAGTTGCGTTACTACCCCGGTTCGCCGTTGATTGCTCGCCTGCTACTGCGTGAACAGGACAGCCTGCAACTGACCGAACTGCACCCG  >  NZ_CP009273/3639018‑3639107 |                                                                                          ggTCAGTTGCGTTACTACCCCGGTTCGCCGTTGATTGCTCGCCTGCTACTGCGTGAACAGGACAGCCTGCAACTGACCGAACTGCACCCg  <  1:525955/90‑1 (MQ=255) ggTCAGTTGCGTTACTACCCCGGTTCGCCGTTGATTGCTCGCCTGCTACTGCGTGAACAGGACAGCCTGCAACTGACCGAACTGCACCCg  >  2:525955/1‑90 (MQ=255) |                                                                                          GGTCAGTTGCGTTACTACCCCGGTTCGCCGTTGATTGCTCGCCTGCTACTGCGTGAACAGGACAGCCTGCAACTGACCGAACTGCACCCG  >  NZ_CP009273/3639018‑3639107

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑