New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | = 3629105 | 0 (0.000) | 27 (1.160) | 17/170 | 0.2 | 100% | coding (905/1053 nt) | yhiM | DUF2776 domain‑containing protein |
? | NZ_CP009273 | 3645397 = | NA (NA) | pseudogene (747/747 nt) | BW25113_RS18155 | hypothetical protein |
AAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGCCTTTTCCTGGCATCGTTTCTTGCGGAAATGGCGCAGACCGACATGGGATATTTTATTCCTTCGCGAGTTCTGGTCGGTTTGGGAG > NZ_CP009273/3629016‑3629191 | aaaaGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTG > 1:282057‑M1/1‑90 (MQ=255) aGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaa < 1:474098‑M1/90‑4 (MQ=255) cTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaata > 2:298135‑M1/1‑77 (MQ=255) cTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaata > 1:188929‑M1/1‑77 (MQ=255) gaCGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggtaattcttc > 1:153224‑M1/1‑61 (MQ=255) gaCGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttc > 2:258980‑M1/1‑61 (MQ=255) gaCGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttc < 1:255142‑M1/90‑30 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctc > 1:242182‑M1/1‑59 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctc > 1:16156‑M1/1‑59 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctc > 1:408340‑M1/1‑59 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctc > 2:155652‑M1/1‑59 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaat < 1:502320‑M1/83‑25 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaat > 2:502320‑M1/1‑59 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaa < 1:478768‑M1/62‑4 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaa > 2:478768‑M1/1‑59 (MQ=255) gTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcg > 2:252352‑M1/1‑58 (MQ=255) aCCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggc < 2:591193‑M1/90‑35 (MQ=255) tGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctga > 2:211848‑M1/1‑53 (MQ=255) tAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtc < 2:395784‑M1/90‑45 (MQ=255) aGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt < 2:251173‑M1/90‑53 (MQ=255) aTACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttct > 2:606414‑M1/1‑35 (MQ=255) gatgatTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg > 1:118524‑M1/1‑30 (MQ=255) gatgatTCCCGTCTTCACCTGCCTGTTTTGgaaggggcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg > 1:424806‑M1/1‑30 (MQ=255) gatTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgttt > 1:51457‑M1/1‑27 (MQ=255) gatTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgttt > 2:531652‑M1/1‑27 (MQ=255) tCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttt > 2:103657‑M1/1‑16 (MQ=255) gcctgTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcc > 2:455665‑M1/1‑10 (MQ=255) tttGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa < 1:252815‑M1/90‑87 (MQ=255) | AAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGCCTTTTCCTGGCATCGTTTCTTGCGGAAATGGCGCAGACCGACATGGGATATTTTATTCCTTCGCGAGTTCTGGTCGGTTTGGGAG > NZ_CP009273/3629016‑3629191 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |