mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutation | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 356981 | 357577 | 597 | 4 [0] | [2] 3 | [lacA] | [lacA] |
| * | * | ÷ | NZ_CP009273 | 2068350 | 2068391 | 42 | 3 [2] | [2] 4 | BW25113_RS10450 | hypothetical protein |
| * | * | ÷ | NZ_CP009273 | 2084682 | 2084729 | 48 | 4 [1] | [2] 4 | hisD | histidinol dehydrogenase |
| * | * | ÷ | NZ_CP009273 | 2085256 | 2085279 | 24 | 3 [0] | [2] 3 | hisD | histidinol dehydrogenase |
| * | * | ÷ | NZ_CP009273 | 2085465 | 2085520 | 56 | 3 [1] | [2] 4 | hisD | histidinol dehydrogenase |
| * | * | ÷ | NZ_CP009273 | 2086208 | 2086292 | 85 | 3 [2] | [2] 3 | hisC | histidinol‑phosphate transaminase |
| * | * | ÷ | NZ_CP009273 | 2102487 | 2102669 | 183 | 3 [2] | [2] 5 | wzx | O16 family O‑antigen flippase |
| * | * | ÷ | NZ_CP009273 | 2121260 | 2121294 | 35 | 3 [2] | [2] 3 | gmd | GDP‑mannose 4,6‑dehydratase |
| * | * | ÷ | NZ_CP009273 | 2125280 | 2125334 | 55 | 3 [1] | [1] 3 | wcaC | colanic acid biosynthesis glycosyltransferase WcaC |
| * | * | ÷ | NZ_CP009273 | 2125533 | 2125632 | 100 | 3 [2] | [2] 3 | [wcaC]–[wcaB] | [wcaC],[wcaB] |
| * | * | ÷ | NZ_CP009273 | 2141811 | 2141866 | 56 | 3 [0] | [2] 3 | yegD | molecular chaperone |
| * | * | ÷ | NZ_CP009273 | 2142924 | 2142980 | 57 | 3 [1] | [2] 3 | yegI | protein kinase YegI |
| * | * | ÷ | NZ_CP009273 | 2145116 | 2145223 | 108 | 3 [2] | [2] 3 | [yegJ]–[pphC] | [yegJ],[pphC] |
| * | * | ÷ | NZ_CP009273 | 2149185 | 2149246 | 62 | 4 [2] | [0] 3 | mdtB | multidrug efflux RND transporter permease subunit MdtB |
| * | * | ÷ | NZ_CP009273 | 2152025 | 2152088 | 64 | 3 [2] | [2] 3 | mdtC | multidrug efflux RND transporter permease subunit MdtC |
| * | * | ÷ | NZ_CP009273 | 2153882 | 2153950 | 69 | 3 [2] | [2] 3 | mdtC | multidrug efflux RND transporter permease subunit MdtC |
| * | * | ÷ | NZ_CP009273 | 2162961 | 2162995 | 35 | 3 [2] | [2] 3 | yegS | lipid kinase YegS |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 103 (3.080) | 35/170 | 0.0 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | = 1391495 | NA (NA) | 15 (0.450) | 7/170 | 1.5 | 100% | intergenic (+146/‑127) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_CP009273 | = 1972751 | 0 (0.000) | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC | |||||
| * | ? | NZ_CP009273 | 1972747 = | 0 (0.000) | 8 (0.240) | 8/168 | 1.3 | 100% | intergenic (‑293/‑487) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283591 | NA (NA) | intergenic (‑67/‑388) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||
| * | ? | NZ_CP009273 | = 1972751 | 0 (0.000) | 37 (1.110) | 24/170 | 0.2 | 100% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||