mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 69 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 353,601 | 0 | C | A | 67.7% | 7.3 / 22.8 | 31 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 822,414 | 0 | T | C | 58.3% | 5.7 / 10.7 | 12 | K99E (AAA→GAA) | ybhS | ABC transporter permease |
| * | NZ_CP009273 | 1,673,561 | 0 | A | C | 56.2% | 14.0 / 17.5 | 16 | Y293S (TAC→TCC) | ydgH | DUF1471 family protein YdgH |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 55.9% | 5.8 / 37.4 | 34 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 1,329,948 | 0 | T | G | 55.6% | 19.1 / 21.5 | 18 | intergenic (+24/‑140) | BW25113_RS25560/acnA | hypothetical protein/aconitate hydratase AcnA |
| * | NZ_CP009273 | 832,042 | 0 | C | G | 55.0% | 6.6 / 19.4 | 20 | A79G (GCG→GGG) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 1,152,731 | 0 | T | A | 54.5% | 6.6 / 13.8 | 11 | L167I (TTA→ATA) | ycfH | metal‑dependent hydrolase |
| * | NZ_CP009273 | 3,781,385 | 0 | T | G | 54.5% | 16.4 / 27.3 | 22 | G396G (GGT→GGG) | envC | murein hydrolase activator EnvC |
| * | NZ_CP009273 | 1,975,994 | 0 | C | G | 53.8% | 8.4 / 13.7 | 13 | intergenic (‑126/+41) | otsB/araH | trehalose‑phosphatase/arabinose ABC transporter permease AraH |
| * | NZ_CP009273 | 2,380,341 | 0 | G | A | 53.8% | ‑1.7 / 14.0 | 13 | intergenic (+31/‑72) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 4,464,532 | 0 | T | G | 53.3% | 56.3 / 60.9 | 62 | *198G (TGA→GGA) | bdcR | TetR/AcrR family transcriptional regulator |
| * | NZ_CP009273 | 546,771 | 0 | A | G | 52.9% | 7.0 / 18.6 | 17 | T293A (ACC→GCC) | ybcF | carbamate kinase |
| * | NZ_CP009273 | 3,214,096 | 0 | T | G | 52.6% | 16.3 / 25.0 | 19 | V415G (GTG→GGG) | ygjG | putrescine aminotransferase |
| * | NZ_CP009273 | 3,991,529 | 0 | A | T | 52.6% | 12.7 / 25.5 | 19 | T63S (ACC→TCC) | uvrD | DNA helicase II |
| * | NZ_CP009273 | 1,812,642 | 0 | A | C | 52.0% | 19.6 / 30.6 | 25 | V39G (GTG→GGG) | celF | 6‑phospho‑beta‑glucosidase |
| * | NZ_CP009273 | 108,789 | 0 | T | C | 51.3% | 29.4 / 42.3 | 37 | S100G (AGC→GGC) | zapD | cell division protein ZapD |
| * | NZ_CP009273 | 5,159 | 0 | G | A | 50.0% | 5.4 / 10.8 | 18 | intergenic (+139/‑75) | thrC/yaaX | threonine synthase/DUF2502 domain‑containing protein |
| * | NZ_CP009273 | 700,996 | 0 | C | A | 50.0% | 23.7 / 16.5 | 26 | P533T (CCG→ACG) | nagE | PTS N‑acetyl glucosamine transporter subunit IIABC |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 50.0% | 12.5 / 19.6 | 34 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 3,726,640 | 0 | T | A | 47.6% | 18.9 / 10.3 | 21 | N360K (AAT→AAA) | xylG | D‑xylose ABC transporter ATP‑binding protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4532499 = | 10 (0.300) | 5 (0.170) | 5/152 | 1.8 | 18.2% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | 4532813 = | 36 (1.200) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||