Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2102487	2102669	183	3 [2]	[2] 5	wzx	O16 family O‑antigen flippase

ATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAA  >  NZ_CP009273/2102662‑2102759         |                                                                                          aTAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATc          <  2:515930/90‑1 (MQ=255)    gggTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGAc       >  1:23276/1‑90 (MQ=255)         gATTAAATTCCCGACTAATGCAGGAACAAACGAcc                                                         >  1:490718/1‑35 (MQ=255)         gATTAAATTCCCGACTAATGCAGGAACAAACGAcc                                                         <  2:490718/35‑1 (MQ=255)         gATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTaa  >  1:259962/1‑90 (MQ=255)         |                                                                                          ATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAA  >  NZ_CP009273/2102662‑2102759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑