Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 2
12 2 4
14 1 2
16 1 2
17 2 4
19 1 2
20 4 10
7 12 26

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 30 138
Multiple Base Substitutions 0 0
Deletions 11 116
Insertions 4 54
Mobile Element Insertions 0 0
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 45 308

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 8 0 261.0 12703299 96.3% 12233276 99.1
A0 F0 I1 R1 8 0 261.0 12703299 96.3% 12233276 99.1
A12 F11 I1 R1 12 0 266.1 8412198 97.8% 8227129 149.8
A12 F11 I1 R1 12 0 266.1 8412198 97.8% 8227129 149.8
A12 F95 I1 R1 14 0 82.1 3059420 95.9% 2933983 148.6
A12 F95 I1 R1 14 0 82.1 3059420 95.9% 2933983 148.6
A14 F68 I1 R1 12 0 75.6 2507154 95.7% 2399346 148.6
A14 F68 I1 R1 12 0 75.6 2507154 95.7% 2399346 148.6
A16 F77 I1 R1 14 0 86.1 2978758 96.2% 2865565 149.8
A16 F77 I1 R1 14 0 86.1 2978758 96.2% 2865565 149.8
A17 F39 I1 R1 13 0 92.9 3137910 95.2% 2987290 148.6
A17 F39 I1 R1 13 0 92.9 3137910 95.2% 2987290 148.6
A17 F83 I1 R1 16 0 99.5 3329440 95.4% 3176285 148.6
A17 F83 I1 R1 16 0 99.5 3329440 95.4% 3176285 148.6
A19 F9 I0 R1 15 0 37.9 1333234 89.6% 1194577 148.2
A19 F9 I0 R1 15 0 37.9 1333234 89.6% 1194577 148.2
A20 F14 I1 R1 10 0 222.5 12005144 96.2% 11548948 98.4
A20 F14 I1 R1 10 0 222.5 12005144 96.2% 11548948 98.4
A20 F20 I1 R1 9 0 51.8 1996854 94.4% 1885030 140.3
A20 F20 I1 R1 9 0 51.8 1996854 94.4% 1885030 140.3
A20 F30 I1 R1 9 0 61.0 2364478 94.7% 2239160 140.8
A20 F30 I1 R1 9 0 61.0 2364478 94.7% 2239160 140.8
A20 F47 I0 R1 39 0 50.2 2011660 91.7% 1844692 145.9
A20 F47 I0 R1 39 0 50.2 2011660 91.7% 1844692 145.9
A20 F47 I1 R1 11 0 66.1 2265610 94.6% 2143267 143.7
A20 F47 I1 R1 11 0 66.1 2265610 94.6% 2143267 143.7

Mutation Needle Plot

Mutation Targets

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