mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | [crl] | [crl] | |
| RA | 1,265,007 | C→T | intergenic (+37/‑5) | hemA → / → prfA | glutamyl tRNA reductase/peptide chain release factor RF‑1 |
| MC JC | 1,299,499 | Δ1,199 bp | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,529,185 | C→T | pseudogene (1284/2037 nt) | rhsE → | pseudogene, Rhs family |
| RA | 1,529,203 | C→A | pseudogene (1302/2037 nt) | rhsE → | pseudogene, Rhs family |
| RA | 1,529,218 | C→T | pseudogene (1317/2037 nt) | rhsE → | pseudogene, Rhs family |
| RA | 1,933,245 | G→A | Q454* (CAG→TAG) | edd ← | 6‑phosphogluconate dehydratase |
| MC JC | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| RA | 2,173,363 | Δ2 bp | intergenic (‑1/+1) | gatC ← / ← gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 3,560,455 | +G | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,823,987 | G→T | G530C (GGT→TGT) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| JC | 3,993,001 | Δ6 bp | coding (1849‑1854/2547 nt) | cyaA → | adenylate cyclase |
| RA | 4,235,435 | Δ1 bp | intergenic (‑2202/‑499) | lysC ← / → yjbE | lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein |
| RA | 4,296,409 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_pgi | 2288919 = | NA (NA) | 86 (0.920) | 63/296 | 0.3 | 93.5% | intergenic (‑5/+146) | yejO/insH1 | pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system/IS5 transposase and trans‑activator |
| ? | NC_000913_3_hsa_pgi | = 4250772 | 6 (0.060) | pseudogene (42/183 nt) | yjbI | pseudogene, SopA‑related, pentapeptide repeats‑containing | |||||
| * | ? | NC_000913_3_hsa_pgi | = 2290112 | NA (NA) | 107 (1.150) | 67/294 | 0.2 | 93.9% | intergenic (‑31/+2) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| ? | NC_000913_3_hsa_pgi | 4250768 = | 7 (0.070) | pseudogene (38/183 nt) | yjbI | pseudogene, SopA‑related, pentapeptide repeats‑containing | |||||
| * | ? | NC_000913_3_hsa_pgi | 4213396 = | 107 (1.140) | 1459 (15.720) | 262/294 | -0.0 | 96.3% | coding (163/384 nt) | yjaA | stress‑induced protein |
| ? | NC_000913_3_hsa_pgi | = 4250767 | 6 (0.060) | pseudogene (37/183 nt) | yjbI | pseudogene, SopA‑related, pentapeptide repeats‑containing | |||||