Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
1 1 1
2 1 1
3 1 1
4 1 1
5 1 1
6 1 1
7 1 1
8 1 1
9 1 1
10 1 1
11 1 1
12 1 1
13 1 1
14 1 1
15 1 1
16 1 1
17 1 1
18 1 1
19 1 1
20 1 1
21 1 1
22 1 1
23 1 1
24 1 1
25 1 1
26 1 1
27 1 1
28 1 1
29 1 1
30 1 1
31 1 1
32 1 1
33 1 1
34 1 1
35 1 1
36 1 1
37 1 1
38 1 1
39 1 1
40 1 1
41 1 1
42 1 1
43 1 1
44 1 1
45 1 1
46 1 1
47 1 1
47 47 47

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 140 362
Multiple Base Substitutions 0 0
Deletions 32 173
Insertions 11 149
Mobile Element Insertions 15 61
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 198 745

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F60 I1 R1 17 0 31.0 1098040 98.9% 1085961 132.7
A2 F60 I1 R1 23 0 45.9 1548470 99.2% 1536082 139.1
A3 F60 I1 R1 13 0 66.1 2245786 99.1% 2225573 139.7
A4 F60 I1 R1 17 0 33.8 1212966 98.8% 1198410 132.7
A5 F60 I1 R1 18 0 145.0 4913530 99.1% 4869308 138.9
A6 F60 I1 R1 16 0 89.9 3066698 99.1% 3039097 139.2
A7 F60 I1 R1 18 0 219.4 7342358 99.0% 7268934 139.1
A8 F60 I1 R1 18 0 124.1 4246592 99.1% 4208372 139.2
A9 F60 I1 R1 14 0 122.5 4201364 99.0% 4159350 139.2
A10 F60 I1 R1 20 0 81.1 2806374 99.2% 2783923 139.4
A11 F60 I1 R1 19 0 81.2 2769194 99.2% 2747040 139.2
A12 F60 I1 R1 18 0 148.4 5087586 98.9% 5031622 139.0
A13 F60 I1 R1 20 0 86.3 2971396 99.1% 2944653 139.2
A14 F60 I1 R1 17 0 287.4 9819666 99.1% 9731289 139.1
A15 F60 I1 R1 11 0 97.9 3336762 99.1% 3306731 138.9
A16 F60 I1 R1 21 0 78.5 2686542 99.1% 2662363 139.1
A17 F60 I1 R1 14 0 51.9 1820130 99.3% 1807389 139.1
A18 F60 I1 R1 18 0 35.9 1292012 99.2% 1281675 132.7
A19 F60 I1 R1 16 0 32.4 1191042 99.2% 1181513 132.9
A20 F60 I1 R1 20 0 72.4 2489094 99.1% 2466692 139.5
A21 F60 I1 R1 16 0 48.0 1620640 99.2% 1607674 139.5
A22 F60 I1 R1 16 0 329.6 11292770 99.2% 11202427 139.5
A23 F60 I1 R1 18 0 61.6 2092650 99.2% 2075908 139.4
A24 F60 I1 R1 17 0 198.2 6851676 99.0% 6783159 139.2
A25 F60 I1 R1 18 0 83.0 2855326 99.1% 2829628 139.2
A26 F60 I1 R1 14 0 64.5 2212006 99.2% 2194309 139.3
A27 F60 I1 R1 22 0 95.6 3256924 99.1% 3227611 138.9
A28 F60 I1 R1 11 0 82.5 2813942 99.0% 2785802 138.6
A29 F60 I1 R1 18 0 97.3 3347178 98.9% 3310359 138.9
A30 F60 I1 R1 15 0 109.5 3730058 99.1% 3696487 138.9
A31 F60 I1 R1 15 0 64.1 2187582 98.8% 2161331 138.7
A32 F60 I1 R1 18 0 102.6 3507422 99.1% 3475855 138.8
A33 F60 I1 R1 16 0 85.2 2888588 99.0% 2859702 138.8
A34 F60 I1 R1 17 0 86.3 2937582 99.1% 2911143 139.2
A35 F60 I1 R1 16 0 64.9 2210988 99.0% 2188878 138.9
A36 F60 I1 R1 16 0 50.4 1708624 99.3% 1696663 139.1
A37 F60 I1 R1 10 0 40.3 1357686 99.4% 1349539 139.4
A38 F60 I1 R1 15 0 18.7 632828 98.9% 625866 139.4
A39 F60 I1 R1 12 0 43.9 1501804 99.4% 1492793 139.5
A40 F60 I1 R1 13 0 91.7 3105786 99.3% 3084045 138.3
A41 F60 I1 R1 13 0 41.9 1423038 99.2% 1411653 138.3
A42 F60 I1 R1 13 0 61.8 2095788 99.3% 2081117 138.7
A43 F60 I1 R1 13 0 86.0 2915732 99.3% 2895321 138.6
A44 F60 I1 R1 11 0 83.0 2829472 99.4% 2812495 138.6
A45 F60 I1 R1 10 0 67.0 2277860 99.4% 2264192 139.0
A46 F60 I1 R1 13 0 84.7 2877034 99.3% 2856894 138.6
A47 F60 I1 R1 11 0 96.2 3277402 99.4% 3257737 138.5

Mutation Needle Plot

Mutation Targets

Entries to show