Notes

Publication:

10.1093/molbev/msu209

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 1
1 1 1
2 1 1
3 1 1
4 1 1
5 1 1
6 1 1
7 1 1
8 1 1
9 1 1
10 1 1
11 11 11

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 120 150
Multiple Base Substitutions 1 1
Deletions 19 28
Insertions 18 23
Mobile Element Insertions 4 4
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 162 206

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 4 2 422.4 11956043 98.9% 11824526 164.0
A1 F124 I1 R1 12 6 26.3 828684 98.8% 818739 149.8
A2 F163 I1 R1 41 5 67.3 2117616 98.6% 2087969 149.6
A3 F120 I1 R1 36 7 80.5 2535135 98.3% 2492037 149.5
A4 F161 I1 R1 14 4 41.2 1300085 98.7% 1283183 149.7
A5 F125 I1 R1 15 5 104.0 3249633 98.8% 3210637 149.3
A6 F164 I1 R1 46 3 95.8 3028594 98.2% 2974079 149.1
A7 F135 I1 R1 15 5 51.2 1623534 97.7% 1586192 149.3
A8 F164 I1 R1 61 5 113.2 3553027 98.8% 3510390 149.5
A9 F131 I1 R1 12 4 111.3 3485305 98.8% 3443481 149.3
A10 F153 I1 R1 15 5 74.1 2387672 96.5% 2304103 148.7

Mutation Needle Plot

Mutation Targets

Entries to show