Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
1 1 1
2 1 1
3 1 1
4 1 1
5 1 1
6 1 1
7 1 1
8 1 1
9 1 1
10 1 1
11 1 1
12 1 1
13 1 1
14 1 1
15 1 1
16 1 1
17 1 1
18 1 1
19 1 1
20 1 1
21 1 1
22 1 1
23 1 1
24 1 1
25 1 1
26 1 1
27 1 1
28 1 1
29 1 1
30 1 1
31 1 1
32 1 1
33 1 1
34 1 1
35 1 1
36 1 1
37 1 1
38 1 1
39 1 1
40 1 1
41 1 1
42 1 1
43 1 1
44 1 1
45 1 1
46 1 1
47 1 1
48 1 1
48 48 48

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 187 387
Multiple Base Substitutions 1 1
Deletions 59 215
Insertions 17 158
Mobile Element Insertions 21 68
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 285 829

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F60 I1 R1 14 0 69.1 2383986 99.2% 2364914 138.8
A2 F60 I1 R1 22 0 57.8 1958256 99.1% 1940631 138.7
A3 F60 I1 R1 28 0 52.8 1788938 99.0% 1771048 138.5
A4 F60 I1 R1 21 0 27.3 935768 99.0% 926410 138.6
A5 F60 I1 R1 11 0 36.0 1230236 99.0% 1217933 138.6
A6 F60 I1 R1 22 0 48.4 1624428 99.0% 1608183 138.6
A7 F60 I1 R1 18 0 30.9 987778 99.0% 977900 138.6
A8 F60 I1 R1 19 0 42.9 1453646 99.1% 1440563 138.6
A9 F60 I1 R1 23 0 26.5 1338742 99.1% 1326693 138.7
A10 F60 I1 R1 17 0 43.8 1489084 99.0% 1474193 139.5
A11 F60 I1 R1 18 0 21.0 699194 99.0% 692202 138.8
A12 F60 I1 R1 15 0 32.8 1119764 99.0% 1108566 138.7
A13 F60 I1 R1 22 0 46.9 1595162 99.1% 1580805 138.7
A14 F60 I1 R1 13 0 48.8 1670670 99.1% 1655633 138.9
A15 F60 I1 R1 18 0 38.5 1308012 99.1% 1296239 138.8
A16 F60 I1 R1 20 0 64.0 2176734 99.1% 2157143 138.6
A17 F60 I1 R1 13 0 23.7 806270 99.1% 799013 138.8
A18 F60 I1 R1 14 0 36.6 1244532 99.2% 1234575 138.7
A19 F60 I1 R1 15 0 29.0 996610 99.1% 987640 138.7
A20 F60 I1 R1 13 0 42.0 1421788 99.0% 1407570 139.4
A21 F60 I1 R1 24 0 41.7 1405236 99.2% 1393994 138.9
A22 F60 I1 R1 11 0 45.3 1544716 99.3% 1533902 138.9
A23 F60 I1 R1 19 0 52.7 1828208 99.4% 1817238 138.9
A24 F60 I1 R1 15 0 47.0 1602464 99.3% 1591246 138.8
A25 F60 I1 R1 23 0 66.5 2252196 99.1% 2231926 138.6
A26 F60 I1 R1 15 0 50.9 1752720 99.2% 1738698 138.9
A27 F60 I1 R1 17 0 59.8 2023660 99.2% 2007470 138.9
A28 F60 I1 R1 15 0 69.5 2366004 99.1% 2344709 139.0
A29 F60 I1 R1 11 0 58.1 2107728 99.1% 2088758 139.0
A30 F60 I1 R1 17 0 68.0 2311432 99.2% 2292940 139.0
A31 F60 I1 R1 14 0 83.6 2873988 99.2% 2850996 139.0
A32 F60 I1 R1 20 0 76.7 2594644 99.2% 2573886 138.8
A33 F60 I1 R1 19 0 56.4 1915652 99.0% 1896495 138.5
A34 F60 I1 R1 16 0 70.9 2406682 99.1% 2385021 138.7
A35 F60 I1 R1 18 0 91.4 3160588 99.0% 3128982 138.4
A36 F60 I1 R1 18 0 57.7 1964988 98.9% 1943373 138.7
A37 F60 I1 R1 15 0 92.0 3050886 99.3% 3029529 138.0
A38 F60 I1 R1 15 0 194.9 6736348 99.1% 6675720 138.9
A39 F60 I1 R1 20 0 82.5 2797738 99.1% 2772558 138.7
A40 F60 I1 R1 10 0 75.9 2617044 99.2% 2596107 138.6
A41 F60 I1 R1 12 0 125.0 4824388 99.3% 4790617 139.4
A42 F60 I1 R1 17 0 70.6 2447830 99.1% 2425799 139.1
A43 F60 I1 R1 19 0 86.9 2939772 99.2% 2916253 139.1
A44 F60 I1 R1 20 0 44.6 1549762 99.0% 1534264 139.4
A45 F60 I1 R1 12 0 84.6 2909072 99.1% 2882890 139.0
A46 F60 I1 R1 19 0 91.9 3242278 99.2% 3216339 139.2
A47 F60 I1 R1 22 0 146.6 5019466 99.1% 4974290 138.9
A48 F60 I1 R1 20 0 82.9 2795698 99.2% 2773332 139.0

Mutation Needle Plot

Mutation Targets

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