mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 866,148 | Δ1 bp | coding (217/1236 nt) | moeA ← | molybdopterin molybdotransferase |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| RA | 1,585,592 | C→G | D299H (GAT→CAT) | ydeP ← | putative oxidoreductase YdeP |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,023,726 | A→C | intergenic (+48/‑242) | fliR → / → rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 3,327,395 | G→A | I90I (ATC→ATT) | rlmE ← | 23S rRNA 2'‑O‑ribose U2552 methyltransferase |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 705867 | 705933 | 67 | 3 [2] | [2] 3 | [nagE] | [nagE] |
| * | * | ÷ | NC_000913 | 928488 | 928537 | 50 | 5 [2] | [2] 3 | cydC | glutathione/L‑cysteine ABC exporter subunit CydC |
| * | * | ÷ | NC_000913 | 993917 | 993985 | 69 | 3 [2] | [2] 3 | ssuB | aliphatic sulfonate ABC transporter ATP binding subunit |
| * | * | ÷ | NC_000913 | 1129248 | 1129323 | 76 | 3 [2] | [2] 4 | murJ | putative lipid II flippase MurJ |
| * | * | ÷ | NC_000913 | 1135227 | 1135278 | 52 | 3 [2] | [2] 3 | flgG | flagellar basal‑body rod protein FlgG |
| * | * | ÷ | NC_000913 | 1142519 | 1142546 | 28 | 3 [2] | [2] 3 | rne | ribonuclease E |
| * | * | ÷ | NC_000913 | 1196288 | 1211432 | 15145 | 3 [2] | [2] 3 | [icd]–[icdC] | [icd],ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,[icdC] |
| * | * | ÷ | NC_000913 | 1280363 | 1280422 | 60 | 3 [1] | [2] 3 | narG | nitrate reductase A subunit alpha |
| * | * | ÷ | NC_000913 | 1286972 | 1287134 | 163 | 3 [2] | [2] 3 | [ychS]–[tpr] | [ychS],[rttR],[tpr] |
| * | * | ÷ | NC_000913 | 3423796–3424231 | 3424523–3424238 | 8–728 | 3 [2] | [2] 4 | [rrlD] | [rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 374963 | NA (NA) | 3 (0.150) | 3/190 | 2.0 | NA | noncoding (33/34 nt) | other | REP31a |
| ? | NC_000913 | = 377487 | NA (NA) | intergenic (+176/+48) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 3363001 = | 54 (1.860) | 35 (1.220) | 29/274 | 0.1 | 55.3% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 3 (0.100) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 35 (1.210) | 29/276 | 0.1 | 94.6% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 2 (0.070) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||