mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 50.0% | 22.1 / 38.3 | 42 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,296,060 | 0 | C | T | 26.9% | 45.1 / 14.1 | 26 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 1,032,688 | 1 | . | C | 25.0% | 23.5 / 14.2 | 16 | coding (550/1119 nt) | hyaA | hydrogenase 1 small subunit |
| * | NC_000913 | 3,240,985 | 0 | T | G | 21.9% | 59.8 / 11.8 | 32 | S348A (TCT→GCT) | sstT | serine/threonine:Na(+) symporter |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3045988 = | 30 (1.030) | 4 (0.150) | 4/256 | 2.2 | 12.9% | intergenic (‑87/+180) | ygfF/gcvP | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase |
| ? | NC_000913 | 3046089 = | 26 (0.970) | intergenic (‑188/+79) | ygfF/gcvP | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase | |||||
| * | ? | NC_000913 | = 3293934 | 43 (1.480) | 3 (0.110) | 3/256 | 2.6 | 8.0% | coding (535/2037 nt) | lpoA | outer membrane lipoprotein ‑ activator of MrcA activity |
| ? | NC_000913 | = 3302328 | 29 (1.080) | coding (844/996 nt) | yhbU | putative peptidase YhbU | |||||