mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 180,186 | A→G | E317G (GAA→GGA) | dgt → | dGTP triphosphohydrolase |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| MC JC | 837,155 | Δ818 bp | [hcxB]–ybiJ | [hcxB], ybiJ | |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,387,243 | Δ2 bp | coding (524‑525/1542 nt) | tyrR → | DNA‑binding transcriptional dual regulator TyrR |
| JC JC | 1,436,955 | IS5 (–) +4 bp | intergenic (‑62/‑163) | ompN ← / → micC | outer membrane porin N/small regulatory RNA MicC |
| RA | 1,682,076 | G→A | intergenic (‑46/‑83) | ydgC ← / → rstA | GlpM family protein/DNA‑binding transcriptional regulator RstA |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,164,468 | C→T | P65S (CCT→TCT) | baeR → | DNA‑binding transcriptional activator BaeR |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,399,556 | Δ1 bp | coding (610/2727 nt) | nuoG ← | NADH:quinone oxidoreductase subunit G |
| RA | 2,430,839 | G→A | intergenic (‑76/+183) | cvpA ← / ← dedD | colicin V production protein/cell division protein DedD |
| RA | 2,804,750 | A→G | intergenic (+289/‑65) | nrdF → / → proV | ribonucleoside‑diphosphate reductase 2 subunit beta/glycine betaine ABC transporter ATP binding subunit ProV |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 4,021,423 | C→T | P400S (CCG→TCG) | ubiB → | ubiquinone biosynthesis protein UbiB |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,559,878 | C→T | A41A (GCG→GCA) | yjiG ← | Gate family protein YjiG |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423770–3424234 | 3424530–3424238 | 5–761 | 26 [22] | [22] 25 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 97 (1.180) | 20 (0.280) | 18/244 | 2.5 | 20.0% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 74 (1.020) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 55 (0.690) | 38/268 | 0.8 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 117 (1.430) | 93 (1.140) | 49/274 | 0.4 | 61.2% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 2 (0.020) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 90 (1.100) | 44/276 | 0.6 | 94.7% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 5 (0.060) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||