Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
1 3 6
2 3 5
3 2 4
4 2 4
5 2 4
5 12 23

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 28 105
Multiple Base Substitutions 0 0
Deletions 11 56
Insertions 1 1
Mobile Element Insertions 0 0
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 40 162

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F15 I0 R1 27 0 82.4 2708054 95.8% 2594315 148.9
A1 F15 I1 R1 6 0 172.8 6050490 95.1% 5754015 146.9
A1 F25 I0 R1 68 0 48.5 1605534 94.9% 1523651 149.0
A1 F25 I1 R1 9 0 108.1 3565614 95.0% 3387333 148.6
A1 F40 I0 R1 17 0 54.6 1820286 95.3% 1734732 149.0
A1 F40 I1 R1 9 0 94.3 3117886 95.4% 2974463 147.7
A2 F15 I0 R1 31 0 70.2 2306366 95.3% 2197966 148.7
A2 F15 I1 R1 9 0 74.9 2481660 95.0% 2357577 148.2
A2 F25 I0 R1 67 0 47.3 1569950 94.7% 1486742 149.0
A2 F25 I1 R1 10 0 85.2 2791112 95.6% 2668303 148.8
A2 F40 I0 R1 20 0 51.3 1715270 95.1% 1631221 148.9
A3 F15 I0 R1 16 0 29.2 1384452 94.9% 1313844 148.9
A3 F15 I1 R1 6 0 124.1 4086766 95.2% 3890601 148.7
A3 F40 I0 R1 21 0 30.9 1510100 95.1% 1436105 148.9
A3 F40 I1 R1 8 0 57.2 1886350 95.3% 1797691 148.3
A4 F15 I0 R1 36 0 89.6 2914746 95.7% 2789411 148.9
A4 F15 I1 R1 7 0 49.4 1635806 94.8% 1550744 147.9
A4 F40 I0 R1 24 0 78.5 2597666 95.5% 2480771 149.0
A4 F40 I1 R1 10 0 27.2 895888 95.1% 851989 148.8
A5 F15 I0 R1 26 0 106.5 3633426 95.1% 3455388 149.0
A5 F15 I1 R1 8 0 66.2 2187826 94.9% 2076246 148.4
A5 F40 I0 R1 19 0 44.1 1463590 94.5% 1383092 148.9
A5 F40 I1 R1 11 0 82.2 2715262 95.2% 2584929 148.1

Mutation Needle Plot

Mutation Targets

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