Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 1
1 3 3
2 4 4
3 3 3
4 3 3
5 14 14

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 49 121
Multiple Base Substitutions 0 0
Deletions 38 126
Insertions 4 30
Mobile Element Insertions 12 51
Amplifications 2 2
Gene Conversions 0 0
Inversions 0 0
Total 105 330

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 15 0 115.9 3911376 93.2% 3645402 148.0
A1 F8 I1 R1 18 0 35.8 1345046 96.5% 1297969 128.0
A1 F47 I1 R1 21 0 36.8 1339408 96.9% 1297886 130.9
A1 F81 I1 R1 32 0 98.3 3242842 98.0% 3177985 144.3
A2 F8 I1 R1 18 0 35.4 1336894 96.1% 1284755 127.7
A2 F72 I1 R1 30 0 43.0 1347696 97.5% 1314003 132.8
A2 F79 I0 R1 70 0 101.1 3414238 97.4% 3325467 139.7
A2 F80 I1 R1 23 0 114.9 4008122 97.9% 3923951 137.1
A3 F6 I1 R1 22 0 25.9 951216 97.4% 926484 128.9
A3 F51 I1 R1 24 0 29.3 1106528 96.5% 1067799 127.2
A3 F86 I1 R1 25 0 106.3 3514698 98.5% 3461977 144.0
A4 F9 I1 R1 19 0 28.3 1123862 96.7% 1086774 120.8
A4 F44 I1 R1 25 0 31.5 1149054 94.8% 1089303 133.9
A4 F71 I1 R1 32 0 91.0 3049958 98.0% 2988958 143.2

Mutation Needle Plot

Mutation Targets

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