Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 2
3 2 4
4 3 4
19 4 6
20 4 5
5 14 21

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 23 91
Multiple Base Substitutions 0 0
Deletions 8 76
Insertions 4 76
Mobile Element Insertions 0 0
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 35 243

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 7 0 203.0 9997222 96.1% 9607330 98.5
A0 F0 I1 R1 7 0 203.0 9997222 96.1% 9607330 98.5
A3 F10 I1 R1 10 0 82.5 2906384 95.1% 2763971 139.7
A3 F10 I1 R1 10 0 82.5 2906384 95.1% 2763971 139.7
A3 F22 I1 R1 11 0 36.6 1275888 94.5% 1205714 142.0
A3 F22 I1 R1 11 0 36.6 1275888 94.5% 1205714 142.0
A4 F11 I1 R1 11 0 39.4 1376754 94.1% 1295525 141.1
A4 F16 I1 R1 14 0 41.2 1445444 93.7% 1354381 142.0
A4 F26 I1 R1 14 0 51.2 1814398 91.8% 1665617 143.6
A4 F26 I1 R1 14 0 51.2 1814398 91.8% 1665617 143.6
A19 F9 I1 R1 0 0 0.0 24006 96.9% 23261 123.7
A19 F20 I1 R1 11 0 75.3 2733482 94.8% 2591340 135.8
A19 F55 I1 R1 12 0 64.5 2238012 95.5% 2137301 140.6
A19 F55 I1 R1 12 0 64.5 2238012 95.5% 2137301 140.6
A19 F90 I1 R1 15 0 152.8 5484496 94.4% 5177364 137.8
A19 F90 I1 R1 15 0 152.8 5484496 94.4% 5177364 137.8
A20 F9 I1 R1 10 0 246.1 8578642 94.5% 8106816 141.7
A20 F13 I1 R1 11 0 136.7 4700844 95.6% 4494006 141.2
A20 F60 I1 R1 15 0 88.5 3041386 95.5% 2904523 141.3
A20 F60 I1 R1 15 0 88.5 3041386 95.5% 2904523 141.3
A20 F103 I1 R1 18 0 58.0 2241182 94.3% 2113434 128.5

Mutation Needle Plot

Mutation Targets

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