Publication: None
ALE replicate | Flask count | Isolate count |
---|---|---|
3 | 3 | 5 |
4 | 5 | 8 |
5 | 3 | 3 |
6 | 4 | 7 |
7 | 4 | 8 |
8 | 2 | 5 |
9 | 4 | 6 |
10 | 4 | 6 |
8 | 29 | 48 |
Mutation Type | Unique | Observed |
---|---|---|
Single Base Substitutions | 662 | 1045 |
Multiple Base Substitutions | 0 | 0 |
Deletions | 26 | 105 |
Insertions | 24 | 32 |
Mobile Element Insertions | 20 | 58 |
Amplifications | 0 | 0 |
Gene Conversions | 0 | 0 |
Inversions | 0 | 0 |
Total | 732 | 1240 |
ALE, Flask, Isolate | Predicted Mutations | Unassigned Missing Coverage Evidence | Mean Coverage | Total Reads | Percent Mapped | Mapped Reads | Average Read Length |
---|---|---|---|---|---|---|---|
A3 F72 I1 R1 | 7 | 0 | 292.7 | 7258224 | 96.3% | 6989669 | 187.3 |
A3 F244 I1 R1 | 11 | 0 | 176.3 | 4507478 | 97.4% | 4390283 | 183.3 |
A3 F412 I1 R1 | 13 | 0 | 65.4 | 2035110 | 96.5% | 1963881 | 151.3 |
A3 F412 I2 R1 | 70 | 0 | 105.0 | 5244496 | 94.3% | 4945559 | 100.0 |
A3 F412 I3 R1 | 53 | 0 | 201.3 | 10250884 | 92.1% | 9441064 | 100.0 |
A4 F13 I1 R1 | 7 | 0 | 98.0 | 1681810 | 94.1% | 1582583 | 282.1 |
A4 F66 I1 R1 | 8 | 0 | 211.5 | 5526476 | 96.9% | 5355155 | 178.8 |
A4 F149 I1 R1 | 11 | 0 | 134.6 | 2291496 | 94.7% | 2170046 | 284.3 |
A4 F237 I1 R1 | 11 | 0 | 118.5 | 3241750 | 98.0% | 3176915 | 167.4 |
A4 F403 I0 R1 | 51 | 0 | 156.8 | 4085907 | 97.3% | 3975587 | 179.2 |
A4 F403 I1 R1 | 11 | 0 | 46.3 | 1469838 | 96.4% | 1416923 | 149.9 |
A4 F403 I2 R1 | 11 | 0 | 175.4 | 8765285 | 94.0% | 8239367 | 100.0 |
A4 F403 I3 R1 | 10 | 0 | 145.2 | 7182203 | 94.4% | 6779999 | 100.0 |
A5 F75 I1 R1 | 9 | 0 | 203.9 | 5537866 | 95.6% | 5294199 | 174.4 |
A5 F150 I1 R1 | 9 | 0 | 158.8 | 2746060 | 94.4% | 2592280 | 282.5 |
A5 F288 I0 R1 | 40 | 0 | 146.2 | 2522132 | 93.7% | 2363237 | 284.5 |
A6 F40 I1 R1 | 12 | 0 | 87.0 | 1535152 | 91.9% | 1410804 | 283.1 |
A6 F76 I1 R1 | 11 | 0 | 181.8 | 4663170 | 97.6% | 4551253 | 179.7 |
A6 F238 I1 R1 | 12 | 0 | 258.3 | 7130258 | 96.8% | 6902089 | 168.2 |
A6 F406 I0 R1 | 35 | 0 | 111.3 | 2499574 | 96.3% | 2407089 | 209.2 |
A6 F406 I1 R1 | 19 | 0 | 66.1 | 1879446 | 94.7% | 1779835 | 168.2 |
A6 F406 I2 R1 | 14 | 0 | 182.2 | 9069404 | 93.8% | 8507100 | 100.0 |
A6 F406 I3 R1 | 15 | 0 | 135.2 | 6912603 | 92.5% | 6394157 | 99.0 |
A7 F20 I1 R1 | 9 | 0 | 106.2 | 2830654 | 95.6% | 2706105 | 178.7 |
A7 F20 I2 R1 | 8 | 0 | 59.0 | 1740170 | 95.8% | 1667082 | 162.4 |
A7 F88 I1 R1 | 8 | 0 | 139.6 | 3723148 | 97.7% | 3637515 | 175.3 |
A7 F88 I2 R1 | 8 | 0 | 93.0 | 2080396 | 95.7% | 1990938 | 211.7 |
A7 F236 I1 R1 | 155 | 0 | 93.2 | 2393300 | 97.8% | 2340647 | 180.9 |
A7 F422 I51 R1 | 223 | 0 | 69.9 | 1534784 | 95.1% | 1459579 | 214.4 |
A7 F422 I52 R1 | 239 | 0 | 220.4 | 11079197 | 93.2% | 10325811 | 100.0 |
A7 F422 I53 R1 | 229 | 0 | 158.0 | 8090706 | 91.1% | 7370633 | 100.0 |
A8 F76 I1 R1 | 9 | 0 | 104.9 | 2862328 | 97.3% | 2785045 | 169.5 |
A8 F380 I0 R1 | 15 | 0 | 20.3 | 466148 | 96.4% | 449366 | 201.4 |
A8 F380 I1 R1 | 14 | 0 | 43.2 | 1447182 | 96.3% | 1393636 | 142.3 |
A8 F380 I2 R1 | 12 | 0 | 199.9 | 10273419 | 92.0% | 9451545 | 99.0 |
A8 F380 I3 R1 | 13 | 0 | 150.7 | 7817698 | 91.1% | 7121922 | 99.0 |
A9 F45 I1 R1 | 9 | 0 | 87.7 | 1474148 | 97.8% | 1441716 | 283.8 |
A9 F83 I1 R1 | 8 | 0 | 149.7 | 4276770 | 95.6% | 4088592 | 166.8 |
A9 F262 I1 R1 | 12 | 0 | 157.4 | 4728876 | 98.2% | 4643756 | 151.6 |
A9 F433 I1 R1 | 15 | 0 | 45.6 | 1401203 | 97.2% | 1361969 | 152.8 |
A9 F433 I2 R1 | 16 | 0 | 192.2 | 10470201 | 89.4% | 9360359 | 99.0 |
A9 F433 I3 R1 | 16 | 0 | 161.1 | 8199666 | 93.6% | 7674887 | 99.0 |
A10 F75 I1 R1 | 13 | 0 | 144.6 | 3959799 | 97.4% | 3856844 | 168.7 |
A10 F247 I1 R1 | 15 | 0 | 174.0 | 4790478 | 97.8% | 4685087 | 166.3 |
A10 F320 I1 R1 | 17 | 0 | 123.6 | 2075634 | 95.0% | 1971852 | 284.6 |
A10 F418 I1 R1 | 19 | 0 | 54.4 | 1474142 | 94.2% | 1388641 | 177.8 |
A10 F418 I2 R1 | 17 | 0 | 222.3 | 11175291 | 94.5% | 10560649 | 99.0 |
A10 F418 I3 R1 | 16 | 0 | 172.0 | 8631016 | 94.8% | 8182203 | 99.0 |