CCK: CCK pts experiment stats

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Notes

Publication:

10.1016/j.ymben.2018.06.005

ALE, flask, and isolate counts

ALE replicate	Flask count	Isolate count
0	1	1
9	1	3
10	1	3
11	1	3
12	1	3
5	5	13

ALE experiment mutation counts

Mutation Type	Unique	Observed
Single Base Substitutions	18	66
Multiple Base Substitutions	0	0
Deletions	10	75
Insertions	3	3
Mobile Element Insertions	0	0
Amplifications	0	0
Gene Conversions	0	0
Inversions	0	0
Total	31	144

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Unassigned Missing Coverage Evidence	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A0 F0 I1 R1	31	0	56.8	1065165	97.7%	1040666	253.4
A9 F131 I0 R1	80	0	103.3	1763998	98.4%	1735774	265.0
A9 F131 I1 R1	12	0	63.3	2199030	94.3%	2073685	142.9
A9 F131 I2 R1	13	0	45.3	1574262	94.4%	1486103	142.7
A10 F135 I0 R1	43	0	78.1	1390606	98.4%	1368356	267.4
A10 F135 I1 R1	8	0	67.1	2410154	94.6%	2280005	142.6
A10 F135 I2 R1	9	0	52.8	1916504	93.9%	1799597	141.5
A11 F138 I0 R1	39	0	66.8	1182276	98.7%	1166906	256.8
A11 F138 I1 R1	12	0	41.2	1437398	94.1%	1352591	142.5
A11 F138 I2 R1	10	0	46.7	1613674	94.9%	1531376	142.7
A12 F142 I0 R1	65	0	79.5	1442294	98.2%	1416332	263.9
A12 F142 I1 R1	11	0	59.1	2131346	94.5%	2014121	142.0
A12 F142 I2 R1	11	0	76.9	2733720	94.5%	2583365	142.8

Mutation Needle Plot

Mutation Targets